View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_39 (Length: 331)

Name: NF11121_low_39
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_39
NF11121_low_39
[»] chr1 (12 HSPs)
chr1 (13-321)||(1816036-1816344)
chr1 (14-321)||(1856700-1857007)
chr1 (89-308)||(1868308-1868527)
chr1 (89-308)||(1842699-1842918)
chr1 (103-317)||(9218860-9219074)
chr1 (92-254)||(9170766-9170928)
chr1 (92-317)||(9200333-9200558)
chr1 (92-314)||(9161940-9162162)
chr1 (92-256)||(9118348-9118512)
chr1 (92-212)||(9156028-9156148)
chr1 (92-266)||(9229734-9229908)
chr1 (286-314)||(9156222-9156250)
[»] chr7 (3 HSPs)
chr7 (154-321)||(37567642-37567809)
chr7 (35-159)||(37572119-37572243)
chr7 (135-179)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (97-176)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 1816036 - 1816344
Alignment:
Q  13 ccagctacctcaacagctatcctaagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816036 ccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaa 1816135  T
Q  113 actcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1816136 actcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaat 1816235  T
Q  213 gaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1816236 gaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcct 1816335  T
Q  313 ctacctatg 321  Q
    |||||||||    
T  1816336 ctacctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 1857007 - 1856700
Alignment:
Q  14 cagctacctcaacagctatcctaagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaa 113  Q
    ||||||||||  | |||||| |||||||||| ||||||||| |||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  1857007 cagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaa 1856908  T
Q  114 ctcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1856907 ctcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatg 1856808  T
Q  214 aattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctc 313  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  1856807 aattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctt 1856708  T
Q  314 tacctatg 321  Q
    ||||||||    
T  1856707 tacctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 1868527 - 1868308
Alignment:
Q  89 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 188  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1868527 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1868428  T
Q  189 agagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccct 288  Q
    ||||| |||| ||||||||||||||||||| || |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    |||    
T  1868427 agagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcct 1868328  T
Q  289 ttgaaaactgtaccaaaacc 308  Q
    |||||||| |||||||||||    
T  1868327 ttgaaaacggtaccaaaacc 1868308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 1842918 - 1842699
Alignment:
Q  89 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 188  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1842918 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1842819  T
Q  189 agagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccct 288  Q
    ||||| || |   ||||||||||||||||| |  |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    |||    
T  1842818 agagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcct 1842719  T
Q  289 ttgaaaactgtaccaaaacc 308  Q
    ||| |||| |||||||||||    
T  1842718 ttgtaaacagtaccaaaacc 1842699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 9218860 - 9219074
Alignment:
Q  103 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 202  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  203 cctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatc-atcaagttcccctttgaaaactgtac 301  Q
    |||||||||||||||| || || ||  || |||||||| |||||||||||||||  || |||||| | |||||   |||  |  ||||||||||||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtac 9219058  T
Q  302 caaaacctcctctacc 317  Q
    ||||||||||||||||    
T  9219059 caaaacctcctctacc 9219074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 254
Target Start/End: Original strand, 9170766 - 9170928
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggacttttt 254  Q
     | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| |||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttt 9170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 317
Target Start/End: Original strand, 9200333 - 9200558
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttg 291  Q
     | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| ||||| |  || |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  292 aaaactgtaccaaaacctcctctacc 317  Q
     |||||||||||||||||||||||||    
T  9200533 taaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 9161940 - 9162162
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttg 291  Q
     | |||| | ||||| |||||||| || ||||||||  || | |||||| ||||||| |||||||  || || ||| | |||||    |   | ||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttgatttgcatctattattttggattttttgacagcgacgattttgttatctggtaagactcctttg 9162139  T
Q  292 aaaactgtaccaaaacctcctct 314  Q
    |||||||||||||||||||||||    
T  9162140 aaaactgtaccaaaacctcctct 9162162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 9118512 - 9118348
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 256  Q
     | || | | ||||||||||||||||| || |||||  || |||||||| || ||||||||||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttga 9118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  192 gacaacatccacctcattaat 212  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 9229734 - 9229908
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaat 266  Q
     | |||| |||||||||| |||||||| || | |||| |  | || ||| |||||||||| ||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaat 9229908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 9156222 - 9156250
Alignment:
Q  286 cctttgaaaactgtaccaaaacctcctct 314  Q
    |||||||||||||||||||||||||||||    
T  9156222 cctttgaaaactgtaccaaaacctcctct 9156250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  154 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  254 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 321  Q
    |||| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 37572243 - 37572119
Alignment:
Q  35 taagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaac 134  Q
    |||||||||||||| ||||| |||| ||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  37572243 taagacgagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaac 37572144  T
Q  135 ttctgtttctagacaacaccctaag 159  Q
    |||||||||||||||||||||||||    
T  37572143 ttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  135 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 179  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  97 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 176  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University