View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_4 (Length: 615)
Name: NF11121_low_4
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 71 - 347
Target Start/End: Original strand, 42298842 - 42299121
Alignment:
| Q |
71 |
taacatcattctttgattatttttgtagtgaaacaatgttggttaaattgatgtgtacnnnnnnn-gtaaaaaataatcgacgtatttttaaatgagatt |
169 |
Q |
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| T |
42298842 |
taacatcattctctaattatttttgtagggaaacaatgttggttaaattgatgtgtacttttttttgtaaaaaataatcgacgtatttttaaatgagatt |
42298941 |
T |
|
| Q |
170 |
tacatgtagagagagacagctgtagacatagtagtagaacaattaaaatttaaaagatcactttacaaattgcaccaagtggtcctctaaaaaagatcac |
269 |
Q |
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| T |
42298942 |
tacatgtagagagagacagcggtagacatagtagtagaacaattaaaatttaaaagaccactttacaaattgcaccaagtggtcctctaaaaaagatcac |
42299041 |
T |
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| Q |
270 |
cgacagttgcttgagtttcccttc--atattttaaagcaatgatatttgaataattatttgatacaataatttttgacaa |
347 |
Q |
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| T |
42299042 |
cgacagttgcttcactttaccttcatatattttagagcaatgatatttgaacaattatttagtacaacattttttgacaa |
42299121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 42299225 - 42299382
Alignment:
| Q |
449 |
tatcacaaaatggttatacaaatattatttctctatattttagacacaggctaatcattagtt----tgtgtnnnnnnnnnnnncaataatattattttg |
544 |
Q |
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| T |
42299225 |
tatcacaaaatggttgtacaaatattatttctccatattttagacacaggctaatcattaattaatttgtgtaaaaaaaaa---caataatattattttg |
42299321 |
T |
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| Q |
545 |
acaacattattcaacaccttatctttctttcaaaaaacattattcaacaccttatgttcat |
605 |
Q |
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| T |
42299322 |
acaacattattcaacaccttatctttctttcaaaaaacattattcaacaccttatgttcat |
42299382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 9048361 - 9048396
Alignment:
| Q |
455 |
aaaatggttatacaaatattatttctctatatttta |
490 |
Q |
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| T |
9048361 |
aaaatggttatacaaatatcatttctctatatttta |
9048396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 483
Target Start/End: Complemental strand, 2886646 - 2886614
Alignment:
| Q |
451 |
tcacaaaatggttatacaaatattatttctcta |
483 |
Q |
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| T |
2886646 |
tcacaaaatggttatacaaatatcatttctcta |
2886614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 483
Target Start/End: Original strand, 36548421 - 36548453
Alignment:
| Q |
451 |
tcacaaaatggttatacaaatattatttctcta |
483 |
Q |
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| T |
36548421 |
tcacaaaatggttatacaaatatcatttctcta |
36548453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 481
Target Start/End: Original strand, 20893281 - 20893313
Alignment:
| Q |
449 |
tatcacaaaatggttatacaaatattatttctc |
481 |
Q |
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| T |
20893281 |
tatcacaaaatggttgtacaaatattatttctc |
20893313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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