View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_41 (Length: 323)
Name: NF11121_low_41
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 29009271 - 29008959
Alignment:
| Q |
1 |
ttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccaaattctctgttctgaattcataacaaactcttcaaccgcgcaaagat |
100 |
Q |
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| T |
29009271 |
ttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccacattctctgttctgaattcataacaaactcttcaaccgcgcaaagat |
29009172 |
T |
|
| Q |
101 |
catatatgttcgcttcaacttcttgattaaattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcattt |
200 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009171 |
catataggttcgcttcaacttcttgattacattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcattt |
29009072 |
T |
|
| Q |
201 |
gcacgctactattttcactgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaatttgaatcgaagctat |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
29009071 |
gcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaatttgaatcgaagctat |
29008972 |
T |
|
| Q |
301 |
agttaactctgtg |
313 |
Q |
| |
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||||||||||||| |
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| T |
29008971 |
agttaactctgtg |
29008959 |
T |
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