View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_45 (Length: 310)
Name: NF11121_low_45
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 36769841 - 36770127
Alignment:
| Q |
1 |
tgcaaaaatttatttgttcttgtacatcggtttaattatatcctttgaaaatattgaattgtnnnnnnngaagatgtattttagcattaaaaagtcacaa |
100 |
Q |
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| T |
36769841 |
tgcagaaatttattcgttcttgtacatcggttta----tatcctttgaaaatattgaattgtaaaaaaagaagatgtattttagcattaaaaagtcacaa |
36769936 |
T |
|
| Q |
101 |
tataatagtttggcattatattatagtgannnnnnnnnnngttttgttgaaagaggtgttatagtgacttgatgcaaagaaattgactgaaagcaatatt |
200 |
Q |
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| T |
36769937 |
tataatagtttggcattatattatagtgattttttttt---ttttgttgaaagaggtgttatagtgacttgatgcaaagaaattgactgaaagcaatatt |
36770033 |
T |
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| Q |
201 |
tgaaacaaagaagaagattcctaatcgatactggacttttctttatggaatttctttgatgcttgctgagtcttccgttaccgtgtatgggtca |
294 |
Q |
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| T |
36770034 |
tgaaacaaagaagaagattcctaatcgatattggacttttctttatggaatttgtttgatgcttgctgagtcttccgttactgtgtatgggtca |
36770127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 36765842 - 36765966
Alignment:
| Q |
1 |
tgcaaaaatttatttgttcttgtacatcggtttaattatatcctttgaaaatattgaattgtnnnnnnngaagatgtattttagcattaaaaagtcacaa |
100 |
Q |
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|||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36765842 |
tgcagaaatttattcgttcttgtacatcggttta----tatcctttgaaaatattgaattgtaaaagaagaagatgtattttagcattaaaaagtcacaa |
36765937 |
T |
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| Q |
101 |
tataatagtttggcattatattatagtga |
129 |
Q |
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| T |
36765938 |
tataatagtttggcattatattatagtga |
36765966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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