View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_46 (Length: 302)
Name: NF11121_low_46
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 28546774 - 28546492
Alignment:
| Q |
18 |
caaatcacaatatgaacatactcacacacacaaaaccaaatcttgtatactataatctatatcactatgatggaaatccattataggtaataatgccaaa |
117 |
Q |
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| T |
28546774 |
caaatcacaatatgaacatactcacacacacaaaaccaaatcttgtatactataatctatatcactatgatggaaatccattataggtaataatgccaaa |
28546675 |
T |
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| Q |
118 |
gggtcaacttagtgagaaatgagaaagttttggtcactacggcgtatttgtgctttcttacgattgtaagactgcttgcttgtgaacccccatttactag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28546674 |
gggtcaacttagtgagaaatgagaaagttttggtcactacggcgtatttgtgctttcttacgattgtaagactgcttgcttgtgaacccccatttactag |
28546575 |
T |
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| Q |
218 |
tatattcagactctaaggatta-------aggataaannnnnnnaagatatcaaacaatacttgcaattaaattcctcctatg |
293 |
Q |
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|||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
28546574 |
tatattcagactttaaggattaaggaataaggataaaaaaatttaatatatcaaacaatacttgcaattaaattcctcctatg |
28546492 |
T |
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