View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_49 (Length: 300)
Name: NF11121_low_49
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 26462978 - 26463243
Alignment:
| Q |
18 |
atattcaaccacactttcagttttttggtgccaagtcatcatctgtcgtggaaggagcaaagtaaaaaggtacatgagactgaagaagaaaggtggtaat |
117 |
Q |
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| T |
26462978 |
atattcaaccatactttcagttttttggtgccaagtcatcatctgtcgtggaaggagcaaagtaaaaaggtacatgagactgaagaagaaaggtggtaat |
26463077 |
T |
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| Q |
118 |
gtgtttagaattttagctttaaaaagttatcataccaccctgccattttctcttctccttttcttttggacattcctttcagctttctcagattttgcta |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26463078 |
gtgattagaattttagctttaaaaagttatcataccaccctgccattttctcttctccttttcttttggacattcctttcagctttctcagattttgcta |
26463177 |
T |
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| Q |
218 |
aacacaccaccattccttaacataaacatcaccctttttccttctgtcaactttttcataaccattcattcat |
290 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26463178 |
aacacaccaccattccttaacat-------accctttttccttctgtcaactttttcataaccattcattcat |
26463243 |
T |
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