View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_50 (Length: 299)
Name: NF11121_low_50
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 40531082 - 40531359
Alignment:
| Q |
18 |
acattaatgtcaatgtccttccacaacattgttttgaacaaaacatcaaacattttaaatacatattctgacacatgaatccaaatctaacatatttgac |
117 |
Q |
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| T |
40531082 |
acattaatgtcaatgtccttccacaacattgttttcaacaaaacatcaaacattttaaaaacatattctgacacatgaatccaaatctaacatatttgac |
40531181 |
T |
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| Q |
118 |
tcagttcaaggtttgcttgttcttccttttttgttaataattccatacttcagactttttctcttagccaccttaaattattcacaatttttgatccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40531182 |
tcagttcaaggtttgcttgttcttccttttttgttaataatttcatacttcagactttttctcttagccaccttaaattattcacaatttttgatccttt |
40531281 |
T |
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| Q |
218 |
cctcacaaacccttctatatcaagtttcaaactttggtttcttcatacccagaaaaccaaaaaaccttcttctcactc |
295 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
40531282 |
cctcacaaacccttctatatcaagtttcaaacttcggtttcttcatatccagaaaaccaaaaaaccttcttcacactc |
40531359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 40536066 - 40536302
Alignment:
| Q |
29 |
aatgtccttccacaacattgttttgaacaaaacatcaaacattttaaatacatattctgacacatgaatccaaatctaacatatttgactcagttcaagg |
128 |
Q |
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|||||||| ||||| ||||||||| |||| | |||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||| |||||||| |
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| T |
40536066 |
aatgtcctaccacagcattgttttatacaa--cctcaaacattttaaaaacatattctgacatatgaatccaaatctaac--atttcactcggttcaagg |
40536161 |
T |
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| Q |
129 |
tttgcttgttc-ttccttttttgttaat--aattccatacttcagactttttctcttagccaccttaaattattcacaatttttgatcctttcctcacaa |
225 |
Q |
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| T |
40536162 |
-ttgcctattctttccttttttgttaattccatt-catacttcaaactttttctcttggccaccttaaattaatcacaaattttgatcccttcctcagaa |
40536259 |
T |
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| Q |
226 |
acccttctatatcaagtttcaaactttggtttcttcataccca |
268 |
Q |
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| T |
40536260 |
acccttctatagcaagtttcattctttggtttcttcacaccca |
40536302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 19149178 - 19149327
Alignment:
| Q |
121 |
gttcaaggtttgcttgttcttccttttttg-ttaataattccatacttcagactttttctcttagccaccttaaattattcacaatttttgatcctttcc |
219 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||| || |
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| T |
19149178 |
gttcaaggtt-gcttgttcttccttttttccttaataattccatacttcagactttttctcttggccacctttaattaatcacaaattttgatccttccc |
19149276 |
T |
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| Q |
220 |
tcacaaacccttctatatcaagtttcaaactttggtttcttcatacccaga |
270 |
Q |
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| T |
19149277 |
tcacaaatcctcctatatcaagtttcaaactttggtttcttcatacccaga |
19149327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 121 - 273
Target Start/End: Original strand, 19430219 - 19430371
Alignment:
| Q |
121 |
gttcaaggtttgcttgttcttccttttttg-ttaataattccatacttcagactttttctcttagccaccttaaattattcacaatttttgatcctttcc |
219 |
Q |
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|||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||| ||||| |
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| T |
19430219 |
gttcaaggtt-gcttgttattccttttttccttaataattccatacttcagactttttctcttgaccacctttaattaatcacaaattttgatcatttcc |
19430317 |
T |
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| Q |
220 |
tcacaaacccttctatatcaagtttcaaactttggtttcttcatacccagaaaa |
273 |
Q |
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| T |
19430318 |
ttacaaatcctcctatatcaagtttcaaactttggtttcttcatacccagaaaa |
19430371 |
T |
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