View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_51 (Length: 299)
Name: NF11121_low_51
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_51 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 27443175 - 27442888
Alignment:
| Q |
19 |
atagccttcttttatcgatggtttgaatcttaattcaacgaatggtattcatttggctcggtcaataaaaaactgagaggcacttatatggaataattct |
118 |
Q |
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| T |
27443175 |
atagccttcttctatcgatggtttgaatcttaattcaacgaatggtatccatttggctcggtcaataaaaaactgagaggcacttatatggaataattct |
27443076 |
T |
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| Q |
119 |
acagtgtatata-------gttatttatttagcctccatgcattggaaatgtctcaatcaaatcttacgtataatacttactttgtcccatgtacgtata |
211 |
Q |
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| T |
27443075 |
acagtgtatatatctttattctatttatttagcctccatgcattggaaatgtctcaatcaaatcttacgtataatacttactttgtcccatgtacgtata |
27442976 |
T |
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| Q |
212 |
ttattgacgaaaataaagnnnnnnnncttatgttaaagaatttatttatatatttcatttagaacgaagacttgatttaatttctaac |
299 |
Q |
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| T |
27442975 |
ttattgacgaaaataaagaaaaaaaaattatgttaaagaatttatttatatatttcatttagagcgaagatttgatttaatctctaac |
27442888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 27433460 - 27433655
Alignment:
| Q |
35 |
gatggtttgaatcttaattcaacgaatggtattcatttggctcggtcaataaaaaactgagaggcacttatatggaataattctacagtgtatatagtta |
134 |
Q |
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| T |
27433460 |
gatggtttgaatcttaattcaacgaatggtattcatttggctcggtcaataaaaaactgagaggcacttatatggaactattctacggcgtgtatagtta |
27433559 |
T |
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| Q |
135 |
tttatttagcctccatgcattggaaatgtctcaatcaaatcttacgtataatacttactttgtcc----catgtacgtatattattgacgaaaataaa |
228 |
Q |
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| T |
27433560 |
tttatttagcctccatccattggaaatgtctcaatcaaatcttacg--tagtacttacttggtcctatgcatgtactgatattattgacgaaaataaa |
27433655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 27221679 - 27221733
Alignment:
| Q |
34 |
cgatggtttgaatcttaattcaacgaatggtattcatttggctcggtcaataaaaa |
89 |
Q |
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| T |
27221679 |
cgatgggttgaatcgtaattcaacgaat-gtattaatttgactcggtcaataaaaa |
27221733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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