View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_54 (Length: 289)

Name: NF11121_low_54
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_54
NF11121_low_54
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-267)||(93532-93795)
[»] chr4 (8 HSPs)
chr4 (46-159)||(102746-102859)
chr4 (47-125)||(161881-161959)
chr4 (188-272)||(38490918-38491002)
chr4 (209-261)||(51164699-51164751)
chr4 (203-252)||(33389936-33389985)
chr4 (188-256)||(46250906-46250974)
chr4 (188-256)||(47044855-47044923)
chr4 (189-257)||(47393532-47393600)
[»] chr3 (4 HSPs)
chr3 (42-144)||(12138415-12138517)
chr3 (188-246)||(47410523-47410581)
chr3 (188-260)||(26782091-26782163)
chr3 (188-256)||(37761154-37761222)
[»] chr7 (4 HSPs)
chr7 (47-146)||(13051630-13051729)
chr7 (188-261)||(43358728-43358801)
chr7 (215-257)||(21802922-21802964)
chr7 (203-245)||(21819565-21819607)
[»] chr6 (2 HSPs)
chr6 (188-260)||(20437628-20437700)
chr6 (188-273)||(32279632-32279717)
[»] chr8 (3 HSPs)
chr8 (46-118)||(5693518-5693590)
chr8 (46-87)||(5671716-5671757)
chr8 (46-87)||(5723759-5723800)
[»] chr2 (3 HSPs)
chr2 (188-265)||(12599495-12599572)
chr2 (207-260)||(34887036-34887089)
chr2 (188-256)||(7301578-7301646)
[»] chr1 (2 HSPs)
chr1 (192-263)||(10428064-10428135)
chr1 (188-260)||(4968716-4968788)
[»] chr5 (1 HSPs)
chr5 (188-246)||(17704300-17704358)


Alignment Details
Target: scaffold0013 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 93532 - 93795
Alignment:
Q  1 agtactttggtttcttgaatcataaatgtgtgtcgaaatggaatgatacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||    
T  93532 agtactttggtttcttgaatcataaatgtgtgttgaaatggaatgatacctggtgacaatatatgtaacgaagaatctctttacgatgttccggtgggaa 93631  T
Q  101 tacagaatcaagatgtccggtaatggagagacaaaaaacctgcaatataaaaaattaatgtttcttagtgtttaatccagataaattattcttatctttc 200  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  93632 tacagaatcaagatgtccagtaatgtagagacaaaaaacctgcaatataaaaaattaatgtttcttagtgtttaatccagataa---attcttatctttc 93728  T
Q  201 tgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaaggagaga 267  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  93729 tgaataacgtcaataaaataacatttttgtaatcaaatttgtttaaaggtataattagaaggagaga 93795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 102859 - 102746
Alignment:
Q  46 atacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaatacagaatcaagatgtccggtaatggagagacaaaaaacctgcaa 145  Q
    |||| |||||||| || |||||||||||||||||||| ||||||||| ||| ||| || |||||||||||||| |||||| ||| ||| |||||||||||    
T  102859 atacttggtgacagtaaatgtaacgaagaatctctttgcgatgttctcgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaa 102760  T
Q  146 tataaaaaattaat 159  Q
    | || |||||||||    
T  102759 tgtagaaaattaat 102746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 161959 - 161881
Alignment:
Q  47 tacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaatacagaatcaagatgtccggtaatg 125  Q
    |||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||| ||||||    
T  161959 tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatg 161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 38490918 - 38491002
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaaggagagaaagtc 272  Q
    |||||||||||| | |||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||| ||| |||| ||||||    
T  38490918 attcttatcttttttaataacattaataaaacaacagttttataatcaaatttgtttaaaggtataattggaaagagaaaaagtc 38491002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 51164699 - 51164751
Alignment:
Q  209 atcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaag 261  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| ||||||||    
T  51164699 atcaataaaataacatttttataatcaaatttgcttaaaaatatgattagaag 51164751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 33389936 - 33389985
Alignment:
Q  203 aataacatcaataaaataacatttttgtaatcaaatttgtttaaagatat 252  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||| |||||    
T  33389936 aataacaccaacaaaataatatttttataatcaaatttgtttaaggatat 33389985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 46250906 - 46250974
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataatt 256  Q
    |||||| ||| | ||||| ||||||| ||||||||||| || | ||||||||||||||| | |||||||    
T  46250906 attcttttctctttgaattacatcaacaaaataacattcttatgatcaaatttgtttaagggtataatt 46250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 47044855 - 47044923
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataatt 256  Q
    |||||||||||| | ||||||| ||  ||||||||||| || |||||||||||||| || | |||||||    
T  47044855 attcttatctttttcaataacaccagcaaaataacattcttataatcaaatttgttcaagggtataatt 47044923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 47393600 - 47393532
Alignment:
Q  189 ttcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataatta 257  Q
    ||||||| ||| ||||| ||| ||| || ||||||||||| |||  || ||||||||||||||||||||    
T  47393600 ttcttatatttttgaatgacaccaacaatataacatttttataagaaattttgtttaaagatataatta 47393532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 12138415 - 12138517
Alignment:
Q  42 aatgatacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaatacagaatcaagatgtccggtaatggagagacaaaaaacct 141  Q
    ||||||||||| || |||||||| |||||||||||||| |||||||| |||| |||||||| ||||||||||||||| |||||| | | ||| |||||||    
T  12138415 aatgatacctgatggcaatatatataacgaagaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacct 12138514  T
Q  142 gca 144  Q
    |||    
T  12138515 gca 12138517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 47410523 - 47410581
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaa 246  Q
    |||||||||||| ||||| ||| |||||||||| ||||||| || ||||||||||||||    
T  47410523 attcttatctttttgaatgacaccaataaaatatcatttttatagtcaaatttgtttaa 47410581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 26782091 - 26782163
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaa 260  Q
    |||||||||||| | ||  ||| ||| |||||| ||||||| ||||||||||  ||||| |||||||||||||    
T  26782091 attcttatctttttaaacgacaacaacaaaatatcatttttataatcaaattcatttaaggatataattagaa 26782163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 37761222 - 37761154
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataatt 256  Q
    |||||||||||| | ||||||| || |||||||||||| || |||||||| ||| |||||  |||||||    
T  37761222 attcttatctttttaaataacaccagtaaaataacattcttataatcaaaattgcttaaaagtataatt 37761154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 13051729 - 13051630
Alignment:
Q  47 tacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaatacagaatcaagatgtccggtaatggagagacaaaaaacctgcaat 146  Q
    |||||| ||||||||||||||| ||||||||||||| | ||| ||||||| ||||||  ||||||||||||| |||||| | | ||||||||||||||||    
T  13051729 tacctgatgacaatatatgtaatgaagaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacacaaaaaacctgcaat 13051630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 43358801 - 43358728
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaag 261  Q
    |||||||||||| | ||| ||| ||| |||||||||||||| || |||||||| ||||||  ||||||||||||    
T  43358801 attcttatctttttaaattacaccaacaaaataacatttttatagtcaaatttatttaaaagtataattagaag 43358728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 21802964 - 21802922
Alignment:
Q  215 aaaataacatttttgtaatcaaatttgtttaaagatataatta 257  Q
    ||||||||||| || || |||||||||||||||||||||||||    
T  21802964 aaaataacattcttatagtcaaatttgtttaaagatataatta 21802922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 21819565 - 21819607
Alignment:
Q  203 aataacatcaataaaataacatttttgtaatcaaatttgttta 245  Q
    ||||||||||| ||||||||||| || ||||||||||||||||    
T  21819565 aataacatcaacaaaataacattcttataatcaaatttgttta 21819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 20437700 - 20437628
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaa 260  Q
    |||||||||||||||||| |||  || |||||||||||||| ||| ||||||||||||| |||||||||||||    
T  20437700 attcttatctttctgaatgacacaaacaaaataacatttttataaacaaatttgtttaaggatataattagaa 20437628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 32279632 - 32279717
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaaggagagaaagtca 273  Q
    |||||||||||| | ||| ||| ||| |||||||||||||| |  ||||||||| |||| |||||||||||||||||| |||||||    
T  32279632 attcttatcttttttaatgacaccaacaaaataacatttttatggtcaaatttgcttaaggatataattagaaggagaaaaagtca 32279717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 5693518 - 5693590
Alignment:
Q  46 atacctggtgacaatatatgtaacgaagaatctctttacgatgttcttgtgagaatacagaatcaagatgtcc 118  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||  ||||  | |||||| ||||||||||||||    
T  5693518 atacctgatgacaatatatgtaacggagaatctctttccgatactctttggggaataccgaatcaagatgtcc 5693590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 5671716 - 5671757
Alignment:
Q  46 atacctggtgacaatatatgtaacgaagaatctctttacgat 87  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||    
T  5671716 atacctgatgacaatatatgtaacggagaatctctttccgat 5671757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 5723759 - 5723800
Alignment:
Q  46 atacctggtgacaatatatgtaacgaagaatctctttacgat 87  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||    
T  5723759 atacctgatgacaatatatgtaacggagaatctcttttcgat 5723800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 12599572 - 12599495
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaaggaga 265  Q
    |||||||||||||| ||| ||||||| ||||||| |||||| |  ||||||||  |||||| |||||||| |||||||    
T  12599572 attcttatctttcttaatgacatcaacaaaataatatttttatcgtcaaatttacttaaaggtataattaaaaggaga 12599495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 34887089 - 34887036
Alignment:
Q  207 acatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaa 260  Q
    ||||||| |||||||||||||| | || |||||| || ||||||||||||||||    
T  34887089 acatcaacaaaataacatttttatgattaaatttattaaaagatataattagaa 34887036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 7301646 - 7301578
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataatt 256  Q
    ||||| |||||| ||||||||| ||| || |||| |||||| ||  ||||||||||||| |||||||||    
T  7301646 attctaatctttttgaataacaccaacaatataatatttttatagacaaatttgtttaatgatataatt 7301578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 10428064 - 10428135
Alignment:
Q  192 ttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaagga 263  Q
    |||||||| ||||| ||| ||| ||||||| ||| || || |||||||||||||| ||||||| ||||||||    
T  10428064 ttatctttttgaatgacaccaacaaaataatattcttatagtcaaatttgtttaacgatataactagaagga 10428135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 4968716 - 4968788
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaaagatataattagaa 260  Q
    |||||||||| ||| ||||||| ||| || |||||||| || |||  |||||||||||||  |||||||||||    
T  4968716 attcttatctatcttaataacaccaacaatataacattattataagaaaatttgtttaaaagtataattagaa 4968788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 17704358 - 17704300
Alignment:
Q  188 attcttatctttctgaataacatcaataaaataacatttttgtaatcaaatttgtttaa 246  Q
    |||||||||||| | |||||||||||||| |||||||| || || | ||||||||||||    
T  17704358 attcttatcttttttaataacatcaataatataacattgttatagtaaaatttgtttaa 17704300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University