View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_57 (Length: 280)

Name: NF11121_low_57
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_57
NF11121_low_57
[»] chr5 (14 HSPs)
chr5 (18-160)||(37412501-37412643)
chr5 (50-280)||(37697612-37697842)
chr5 (46-280)||(37824716-37824950)
chr5 (46-280)||(37533921-37534155)
chr5 (46-280)||(37640693-37640927)
chr5 (46-280)||(37712445-37712679)
chr5 (46-279)||(37436528-37436761)
chr5 (50-280)||(37595149-37595379)
chr5 (195-280)||(37412419-37412504)
chr5 (50-280)||(37399917-37400147)
chr5 (46-280)||(37381440-37381674)
chr5 (46-280)||(37703489-37703723)
chr5 (100-204)||(37429616-37429720)
chr5 (106-280)||(37392066-37392237)
[»] chr4 (2 HSPs)
chr4 (50-280)||(24216845-24217075)
chr4 (46-278)||(16841983-16842215)
[»] chr3 (1 HSPs)
chr3 (46-280)||(14553859-14554093)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 37412643 - 37412501
Alignment:
18 atcacatgctttaagcgataactggttgagagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtacctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37412643 atcacatgctttaagcgataactggttgagagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtacctt 37412544  T
118 agaggagtgctccagttgaacattggaagttttccaataaggt 160  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
37412543 agaggagtgctccagttgaacattggaagttttacaataaggt 37412501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 37697612 - 37697842
Alignment:
50 acttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 149  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||  ||||||| || ||||||||||||||||||||||||||| || |||||||||     
37697612 acttcaattgacctatggaataaggaatttcacctgagaaagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttggaagttg 37697711  T
150 tccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctaga 249  Q
     ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||| | ||||    
37697712 accactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtttcgtaga 37697811  T
250 ctaagagagaccagagaggatgacaaattct 280  Q
    |||||||| |||| |||||||||||||||||    
37697812 ctaagagaaaccaaagaggatgacaaattct 37697842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 37824716 - 37824950
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||  ||   ||||||| |||||||||||||||||||||||||||||| || ||||||    
37824716 agagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggtccaagtaccttagaggagtgctccagttggactttggaa 37824815  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||| |     
37824816 gttgaccactaaggttatgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtttcg 37824915  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
37824916 tagactaagagaaaccaaagaggatgacaaattct 37824950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 37533921 - 37534155
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||  ||  ||||||||  ||||||||||||||||||||||||||||| || ||||||    
37533921 agagacttcaattgacctatggaataaggaatttcacctgaaaaagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaa 37534020  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  ||||||||||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |        
37534021 gttgaccactaaggttatcattagatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctga 37534120  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
37534121 tagactaagagaaaccaaagaggatgacaaattct 37534155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 37640693 - 37640927
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  || ||||  ||| | |||||||||||||||||||||||||||| || ||||||    
37640693 agagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaa 37640792  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| || |     
37640793 gttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttttcg 37640892  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
37640893 tagactaagagaaaccaaagaggatgacaaattct 37640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 37712445 - 37712679
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||  ||   |||||||  ||||||||||||||||||||||||||||| || ||||||    
37712445 agagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaa 37712544  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||  |     
37712545 gttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtctcg 37712644  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
37712645 tagactaagagaaaccaaagaggatgacaaattct 37712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 279
Target Start/End: Original strand, 37436528 - 37436761
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  || ||||  ||| | |||||||||||||||||||||||||||| || ||||||    
37436528 agagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaa 37436627  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||||    |    
37436628 gttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactgagtggatgc 37436727  T
246 tagactaagagagaccagagaggatgacaaattc 279  Q
    |||||||||||| |||| ||| ||||||||||||    
37436728 tagactaagagaaaccaaagaagatgacaaattc 37436761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 37595149 - 37595379
Alignment:
50 acttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 149  Q
    ||||||| ||||||||||||||||||||||||||||| |||  || ||||  ||| | |||||||||||||||||||||| ||||| || |||||||||     
37595149 acttcaattgacctatggaataaggaatttcacctgaaaaagcagataaacggaggttcaagtaccttagaggagtgctcaagttggactttggaagttg 37595248  T
150 tccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctaga 249  Q
     ||| ||||||  |||||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  |||||||||||||| | |||||| | ||||    
37595249 accactaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaacccagtgtttcgtaga 37595348  T
250 ctaagagagaccagagaggatgacaaattct 280  Q
      |||||| |||| ||||||||| |||||||    
37595349 agaagagaaaccaaagaggatgaaaaattct 37595379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 37412504 - 37412419
Alignment:
195 aggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37412504 aggtaaagagggaatgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 37412419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 37400147 - 37399917
Alignment:
50 acttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 149  Q
    ||||||| || ||||||||||| |||||||||||||| |||  ||   |||||||  ||||||||||||||||||||||||||||| || |||||||||     
37400147 acttcaattggcctatggaatagggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttg 37400048  T
150 tccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctaga 249  Q
     ||| ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |    ||||    
37400047 accactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctgataga 37399948  T
250 ctaagagagaccagagaggatgacaaattct 280  Q
    |||||||| |||| |||||||||||||||||    
37399947 ctaagagaaaccaaagaggatgacaaattct 37399917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 37381674 - 37381440
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||   ||   |||||| ||||||||||| | |||||||||||||||| |  | ||||    
37381674 agagacttcaactggcctatggaataaggaatttcacctgagaaaggggtgcgagagaggtccaagtacctcaaaggagtgctccagttggatttcggaa 37381575  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  |   | || |  | ||||||||| |||||||||  ||| ||||||||||||||| | | ||||||||  |||||||||||||| | ||| |  ||    
37381574 gttgactgctcagatatttattagatgataaatctagtgtttggagattaggtaaagagaggatgtcacttgacaaatttccttgcaacccagtttctcc 37381475  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    ||||| |||||| |||| |||||||||||||||||    
37381474 tagaccaagagaaaccaaagaggatgacaaattct 37381440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 37703489 - 37703723
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||  ||   ||||||| | |||||| |||||||||| |||||||||| |  ||||||    
37703489 agagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggttcaagtatcttagaggagagctccagttggattttggaa 37703588  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||  | |||  |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |        
37703589 gttgaccactaaggttataattgaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctga 37703688  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
37703689 tagactaagagaaaccaaagaggatgacaaattct 37703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 37429616 - 37429720
Alignment:
100 gagagatccaagtaccttagaggagtgctccagttgaacattggaagttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggta 199  Q
    ||||| |||||||||||||| ||||||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||||||||||||||||||||| ||||    
37429616 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 37429715  T
200 aagag 204  Q
    |||||    
37429716 aagag 37429720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 37392237 - 37392066
Alignment:
106 tccaagtaccttagaggagtgctccagttgaacattggaagttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagg 205  Q
    |||||||||||||||||||||||||||||  |  |||||||||| ||  |||| || | |||   |||||||||||||  |||||||||||||||||||     
37392237 tccaagtaccttagaggagtgctccagtttgattttggaagtttaccgctaagttcattatt---tgacaaatctagtctttgaagattaggtaaagaga 37392141  T
206 gaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 280  Q
    | | | ||||||  |||||||||||||| | | | |  ||||| |||||||| |||| ||||||||||| |||||    
37392140 ggatggcacttgacaaatttccttgcaacccaatttctcctagcctaagagaaaccaaagaggatgacacattct 37392066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 24217075 - 24216845
Alignment:
50 acttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 149  Q
    ||||||||||||| || || || | ||||||||||||||||  ||  |||||||| |||||||||||||| ||||||||||||||| || |||||| |||    
24217075 acttcaactgaccaatagagtatgaaatttcacctgagaaaccagagaaagagaggtccaagtaccttaggggagtgctccagttggacgttggaaattt 24216976  T
150 tccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctaga 249  Q
     |||  |||||| | ||| |||||||||||||||| ||||||||| ||||||||| | | ||||||||  | |||||||||||| | ||||    |||||    
24216975 accacgaaggtcttgattcgatgacaaatctagtttttgaagatttggtaaagagaggatgtcacttgacatatttccttgcaatccagtggatgctaga 24216876  T
250 ctaagagagaccagagaggatgacaaattct 280  Q
    |||||||| |||| |||||||||||||||||    
24216875 ctaagagaaaccaaagaggatgacaaattct 24216845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 16842215 - 16841983
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    |||||||| || |||||||||||||| |  ||||| |||||||||  |||   |||||| | |||||||||||||||||||||||||||| |  ||||||    
16842215 agagactttaattgacctatggaataggagatttctcctgagaaagcagtatgagagaggtacaagtaccttagaggagtgctccagttggattttggaa 16842116  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||||| | ||||  |||||||||||||  ||||||||| |  |||||| | | |||||||   |||||||||||||||| ||||||  |    
16842115 gttgaccactaaggtcttgattatgtgacaaatctagtctttgaagatttgacaaagagagtatgtcacttaacaaatttccttgcaaaccagtgtttgc 16842016  T
246 tagactaagagagaccagagaggatgacaaatt 278  Q
    ||||  |||||| |||| |||||||||||||||    
16842015 tagatgaagagaaaccaaagaggatgacaaatt 16841983  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 14553859 - 14554093
Alignment:
46 agagacttcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaa 145  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||   ||  ||| | |||||||||||||||||| ||||||||| |  ||||||    
14553859 agagacttcaattgacctatggaataaggaatttcacctgagaaagcagagtaatggaggtacaagtaccttagaggagtactccagttggattttggaa 14553958  T
146 gttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccc 245  Q
    |||  ||| ||||  | ||||||  |  ||||||||||| ||||||||| || |||||| | | ||||||||  |||||||||||||| |  |||||  |    
14553959 gttgaccactaagaccatcattacctaccaaatctagtttttgaagatttggcaaagagagtatgtcacttgacaaatttccttgcaacccggtgtttgc 14554058  T
246 tagactaagagagaccagagaggatgacaaattct 280  Q
    |||||||||||| |||| |||||||||||||||||    
14554059 tagactaagagaaaccaaagaggatgacaaattct 14554093  T

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