View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_58 (Length: 271)
Name: NF11121_low_58
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 39840504 - 39840266
Alignment:
| Q |
20 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgataga |
119 |
Q |
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| T |
39840504 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatccttttcgataggatctttgatctcattaaaatctgataga |
39840405 |
T |
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| Q |
120 |
aaagtagagaaaggaacaattaatcatggattaaattagctacaattgaagtgtaaggaatgaatagtgaatcaacataacataacataactaacgaaca |
219 |
Q |
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| T |
39840404 |
aaagtagagaaaggaacaattaatcatggattaaattagctacaattgaagtgtaaggaatgaatagtgaatcaacataaca-----taactaacgaaca |
39840310 |
T |
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| Q |
220 |
gactcaccagttggtaacagatattgactagttgcgcttcttct |
263 |
Q |
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| T |
39840309 |
gactcaccagttggtaacagatattgactagttgcgcttcttct |
39840266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 44630881 - 44631029
Alignment:
| Q |
20 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgataga |
119 |
Q |
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| T |
44630881 |
gttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgataga |
44630980 |
T |
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| Q |
120 |
aaagtagagaaaggaacaattaatcat---ggattaaattagctacaat |
165 |
Q |
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| T |
44630981 |
aaagtagagaaaggaaaaattaatcatagatgattaaattagctacaat |
44631029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 44797861 - 44798009
Alignment:
| Q |
20 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgataga |
119 |
Q |
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| T |
44797861 |
gttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgataga |
44797960 |
T |
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| Q |
120 |
aaagtagagaaaggaacaattaatcat---ggattaaattagctacaat |
165 |
Q |
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| T |
44797961 |
aaagtagagaaaggaaaaattaatcatagatgattaaattagctacaat |
44798009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 35162253 - 35162105
Alignment:
| Q |
20 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgataga |
119 |
Q |
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| T |
35162253 |
gttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatatcattaaaatctgataga |
35162154 |
T |
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| Q |
120 |
aaagtagagaaaggaacaattaatcat---ggattaaattagctacaat |
165 |
Q |
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| T |
35162153 |
aaagtagagaaaggaaaaattaatcatcgatgattaaattagctacaat |
35162105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 39845372 - 39845311
Alignment:
| Q |
104 |
attaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaaattagctacaat |
165 |
Q |
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| T |
39845372 |
attaaaatctgatagaaaagtagagaaaggaacaattaatcatcgattaaattaactacaat |
39845311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 39845468 - 39845404
Alignment:
| Q |
20 |
gttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttt |
84 |
Q |
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| T |
39845468 |
gttccgagtttgtgaattataatcccgtattgccaaagtgacacatttgataagcctatcctttt |
39845404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 39845215 - 39845135
Alignment:
| Q |
176 |
ggaatgaatagtgaatcaacataacataacataactaacgaacagactcaccagttggtaacagatattgactagttgcgcttcttct |
263 |
Q |
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| T |
39845215 |
ggaatgaatagtgaatcaacataacg-------agtaacgaacagactcaccacatggtaacagagattgacgaattgcgcttcttct |
39845135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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