View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_6 (Length: 562)

Name: NF11121_low_6
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_6
NF11121_low_6
[»] chr1 (11 HSPs)
chr1 (16-556)||(6371536-6372079)
chr1 (365-454)||(6414276-6414368)
chr1 (359-457)||(6426923-6427021)
chr1 (351-449)||(6403334-6403432)
chr1 (376-454)||(6346865-6346943)
chr1 (360-412)||(6357832-6357884)
chr1 (365-454)||(6356364-6356456)
chr1 (351-419)||(6397187-6397255)
chr1 (360-419)||(6379501-6379560)
chr1 (360-449)||(6366076-6366168)
chr1 (351-419)||(6419677-6419745)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 556
Target Start/End: Original strand, 6371536 - 6372079
Alignment:
Q  16 aacacaacctaagacaaagacacagtacaaaccgttttgattttgaataaatttttgtcttatatnnnnnnnntt-ggacaaaaatctattttggtattt 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        || ||||||||||| ||||||||||||    
T  6371536 aacacaacctaagacaaagacacggtacaaaccgttttgattttgaataaatttttgtcttatataaaaaaaatttggacaaaaatcgattttggtattt 6371635  T
Q  115 tatgattnnnnnnntcctaacatgatttagtaagagacaaaaatttgagttttttgtcatgttcctcaccccaatttgttatgtctttgaaacagcttaa 214  Q
    |||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371636 tatgattaaaaaaatcctaacatgatttagtaaaagacaaaaatttgagttttttgtcatgttcctcaccccaatttgttatgtctttgaaacagcttaa 6371735  T
Q  215 caaccaaacattgtataactgaagttggtgaataaaaaatagtttctttttct--gtcttcttgttgttctcctgctaaaacaaaaaagcttgaaacttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  6371736 caaccaaacattgtataactgaagttggtgaataaaaaatagtgtctttttctttgtcttcttgttgttctcctgctaaaacaaaaaagcttgaaacttt 6371835  T
Q  313 gaactatttcattctcttatcatgtttcaaatgggaagtggaagaagatcacgggaggaagagatttactggatccattttcagttcatccatttcaccc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6371836 gaactatttcattctcttatcatgtttcaaatgggaagtggaagaagatcacgggaggaagagatttactggaaccattttcagttcatccatttcaccc 6371935  T
Q  413 tatttctgagcaccacccattttcaacaataacttgttagtattctttttgctctttctctttccttccattgttctaaatgaaagaaaaatgaaacttt 512  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371936 tatttctgagcaccacccattttcaacaacaacttgttagtattctttttgctctttctctttccttccattgttctaaatgaaagaaaaatgaaacttt 6372035  T
Q  513 tctttattagggtgttgactattgagtacatgcacttcatctca 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6372036 tctttattagggtgttgactattgagtacatgcacttcatctca 6372079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 6414276 - 6414368
Alignment:
Q  365 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgttagta 454  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||| ||||||||||| ||| ||| ||||    
T  6414276 gggaggaagagatttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctgtaagta 6414368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 457
Target Start/End: Original strand, 6426923 - 6427021
Alignment:
Q  359 gatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgttagtattc 457  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||| | ||||||  ||| |||  ||||||||||| |||||||||||||||    
T  6426923 gatcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttcttcgcaacactgattttcaacaacaacttgttagtattc 6427021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 6403334 - 6403432
Alignment:
Q  351 tggaagaagatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgt 449  Q
    |||||| |||||  |||||||||| |||||||||| ||||||||| |||||||||||||| |||||||| ||||||    ||||||||||| |||||||    
T  6403334 tggaagtagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttcttagcacctttgattttcaacaacaacttgt 6403432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 454
Target Start/End: Original strand, 6346865 - 6346943
Alignment:
Q  376 atttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgttagta 454  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||  ||||||| ||||    
T  6346865 atttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgtaagta 6346943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 6357832 - 6357884
Alignment:
Q  360 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccc 412  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  6357832 atcatgggaggaagacatttactggacccattttcagttcatccatttcaccc 6357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 6356364 - 6356456
Alignment:
Q  365 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgttagta 454  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||    | ||||||| ||||||||||| ||||||| ||||    
T  6356364 gggagaaagagatttactggacccattttcagttcattcatttcatccaatttcttcaaaccaccaccgattttcaacaacaacttgtgagta 6356456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 6397187 - 6397255
Alignment:
Q  351 tggaagaagatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 419  Q
    |||||| |||||  |||| ||||| |||||||||| |||||| ||||||||||||||||||| ||||||    
T  6397187 tggaagcagatcttgggaagaagatatttactggacccatttccagttcatccatttcacccaatttct 6397255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 6379501 - 6379560
Alignment:
Q  360 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 419  Q
    |||| |||||||||| |||||||||| |||||| || |||||||||||||||| ||||||    
T  6379501 atcatgggaggaagacatttactggacccatttccaattcatccatttcacccaatttct 6379560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 449
Target Start/End: Original strand, 6366076 - 6366168
Alignment:
Q  360 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgt 449  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| | |||||    ||||||||| ||||||||||| |||||||    
T  6366076 atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt 6366168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 6419677 - 6419745
Alignment:
Q  351 tggaagaagatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 419  Q
    |||||| |||||  |||| ||||| |||||||||| | ||||||||||||| |||||||||| ||||||    
T  6419677 tggaagcagatcctgggaagaagatatttactggaacaattttcagttcattcatttcacccaatttct 6419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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