View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_low_60 (Length: 265)
Name: NF11121_low_60
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 11010789 - 11010554
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010789 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
11010690 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtttacagtagcaactcat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010689 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtttacagtagcaactcat |
11010590 |
T |
|
| Q |
211 |
ggacttccgatggtacatcagttagtggttccaagg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010589 |
ggacttccgatggtacatcagttagtggttccaagg |
11010554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 11028820 - 11029053
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| || ||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
11028820 |
cacagatcaggaaatgaaattggcaaagaaaatgatgactgcggctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggataaagttttg |
11028919 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgt---------ttacagta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| | ||| |||||| | | |||| |
|
|
| T |
11028920 |
gagatgcttgaagaagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagatccactagtagaggatgttggagtcgataatagta |
11029019 |
T |
|
| Q |
202 |
gcaactcatggacttccgatggtacatcagttag |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
11029020 |
gcaactcatggacttcctatggtacatcagttag |
11029053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 10914488 - 10914305
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| || || ||||||||||| |||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
10914488 |
cacagatcaggaaatgaaattggcaaagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagttttg |
10914389 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||| |||||| |
|
|
| T |
10914388 |
gagatgcttgaagaagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcagatgtt |
10914305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10932869 - 10932624
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagtttt- |
109 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
10932869 |
cacagatcaggaaatgaaattggcaaagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagtttta |
10932770 |
T |
|
| Q |
110 |
ggagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt-----ta----cagt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||| || ||| |
|
|
| T |
10932769 |
ggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgttggagataatagtagt |
10932670 |
T |
|
| Q |
201 |
agcaactcatggacttccgatggtacatcagttagtggttccaagg |
246 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
10932669 |
agcaactcatggacttcctatggtacatcagttagtgatcccaagg |
10932624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10979223 - 10978979
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||| |
|
|
| T |
10979223 |
cacagatcaggaaataaaattggcaaagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttg |
10979124 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgt---------ttacagta |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||||| ||| | || |
|
|
| T |
10979123 |
gagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgttggagatgattataata |
10979024 |
T |
|
| Q |
202 |
gcaactcatggacttccgatggtacatcagttagtggttccaagg |
246 |
Q |
| |
|
| |||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
10979023 |
gaaactcatggagttcgtatggtacatcagttagtgattccaagg |
10978979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 10903328 - 10903156
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| ||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
10903328 |
cacagatcaggaaatgaaattggcaaagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagttttg |
10903229 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaa |
183 |
Q |
| |
|
|||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10903228 |
gagatgcttgaaaaagaagatggggacttacaaattcctaataagccttacttttgtccacaagatccaccaa |
10903156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 11005233 - 11005398
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
||||||| | |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
11005233 |
cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt |
11005332 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagat |
176 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || ||||||||||||||| ||| |||||||||| |
|
|
| T |
11005333 |
gagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat |
11005398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 10993917 - 10994082
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
||||||| | |||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
10993917 |
cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgatt |
10994016 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagat |
176 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || ||||||||||||||| ||| |||||||||| |
|
|
| T |
10994017 |
gagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat |
10994082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 10901552 - 10901387
Alignment:
| Q |
11 |
cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg |
110 |
Q |
| |
|
||||||| | |||||||| | |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
10901552 |
cacagatgaagaaatgaaattggcaaagaaaacgatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatggataaagtgatt |
10901453 |
T |
|
| Q |
111 |
gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagat |
176 |
Q |
| |
|
|||||||||| | |||||||||| || ||||| || ||||| ||||||||| ||| |||||||||| |
|
|
| T |
10901452 |
gagatgcttgcataagaagatggggatttgcaaatgcctaagaagccttacctttatccacaagat |
10901387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 11033075 - 11032933
Alignment:
| Q |
16 |
atcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagat |
115 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||| ||||| || |||||||| ||| | |||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
11033075 |
atcatgaaatgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtgttggagat |
11032976 |
T |
|
| Q |
116 |
gcttgaagaagaagatggagacttgcagattcctaataagcct |
158 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||||||||||| |
|
|
| T |
11032975 |
gcttgaagaagaagatgaagatttgcaaatgcctaataagcct |
11032933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 11007605 - 11007480
Alignment:
| Q |
33 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
132 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| || | |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11007605 |
gcaaagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaagaagaagatg |
11007506 |
T |
|
| Q |
133 |
gagacttgcagattcctaataagcct |
158 |
Q |
| |
|
||| ||||| || |||||| ||||| |
|
|
| T |
11007505 |
aagatttgcaaatgcctaatcagcct |
11007480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 10903130 - 10903084
Alignment:
| Q |
200 |
tagcaactcatggacttccgatggtacatcagttagtggttccaagg |
246 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
10903130 |
tagcaactcatggacttcctatggtacatcaattagtgatcccaagg |
10903084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University