View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_61 (Length: 264)
Name: NF11121_low_61
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 654647 - 654844
Alignment:
| Q |
32 |
atctcaactatatgttacacaagtatgacctatcatatcactatactattgtgcatcaaaccacttccttgtgacaaaagaaagaagttaactaaataac |
131 |
Q |
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| T |
654647 |
atctcaactatatgttacacaagtatgacctatcatatcactatac---------------cacttccttgtgacaaaagaaagaagttaactaaataac |
654731 |
T |
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| Q |
132 |
caacaatgnnnnnnnnnnnngacacataattctattgtgcaagattatgtatttacaattgacattatgcatcaatattaatagcctcttcaacaaaaaa |
231 |
Q |
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| T |
654732 |
caacaatgaaaaacaaaaaagacacataattctattgtgcaagattatgtatttacaattgacattatgcatc------aatagcctcttcaacaaaaaa |
654825 |
T |
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