View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_68 (Length: 251)
Name: NF11121_low_68
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 46852606 - 46852749
Alignment:
| Q |
93 |
taaggcaagtagggtggccaggtggctagtttatcttgttggtaatgtttgcaaagatcgcgagggtacactctccacctcgcaacaatagtttgataac |
192 |
Q |
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| T |
46852606 |
taaggcaagtagggtagccaggtggctagtttatcttgttggtaatgtttgcaaagatcgcgagggaacactctccacctcgcaacaatagtttgataac |
46852705 |
T |
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| Q |
193 |
aataataactgagaaagcgagtgtttgagaaaccaattaaaaag |
236 |
Q |
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| T |
46852706 |
aataataaccgagaaagcgagtgtttgagaaaccaagtaaaaag |
46852749 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 46852410 - 46852440
Alignment:
| Q |
8 |
ttcaagcacatccaatggctccaatgagaag |
38 |
Q |
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| T |
46852410 |
ttcaagcacatccaatggctccaatgagaag |
46852440 |
T |
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