View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_7 (Length: 560)
Name: NF11121_low_7
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 15 - 546
Target Start/End: Original strand, 35684539 - 35685070
Alignment:
| Q |
15 |
aaatgtaactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgtt |
114 |
Q |
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| T |
35684539 |
aaatgtaactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaagtctactatgtt |
35684638 |
T |
|
| Q |
115 |
ccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgc |
214 |
Q |
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| T |
35684639 |
ccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgtgc |
35684738 |
T |
|
| Q |
215 |
atggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttt |
314 |
Q |
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| T |
35684739 |
atggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttt |
35684838 |
T |
|
| Q |
315 |
tagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacg |
414 |
Q |
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| T |
35684839 |
tagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacg |
35684938 |
T |
|
| Q |
415 |
gttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagtt |
514 |
Q |
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| T |
35684939 |
gttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagtt |
35685038 |
T |
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| Q |
515 |
ctaaacctagtagatccgaaattgttattgtt |
546 |
Q |
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| T |
35685039 |
ctaaacctagtagatccgaaattgttattgtt |
35685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 33 - 470
Target Start/End: Complemental strand, 40672585 - 40672148
Alignment:
| Q |
33 |
tcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattcttt |
132 |
Q |
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| T |
40672585 |
tcaggtggtggttgcaactcatgcttatggaaatcgatctggggtcagatatatgactggtggtctgaaagtatactatgttccatggagaccatttgtt |
40672486 |
T |
|
| Q |
133 |
aatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaacctttt |
232 |
Q |
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| T |
40672485 |
atgcagaatacgtttccaaccatctatgggttattaccaattataagaacgattcttattcgagaaagaattacagtggtgcatggacaccaagcctttt |
40672386 |
T |
|
| Q |
233 |
caacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtat |
332 |
Q |
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| ||| |||||||||| | || |||||||| |||| |||||||||||||||||||||||| |||||||| || | |||||| |||||||||||| || |
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| T |
40672385 |
cgacattttgtcatgaaactctcatgcatgcaagaaccatgggatacaaggttgtgtttacagatcattctctgtacggttttgctgatgctggaagcat |
40672286 |
T |
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| Q |
333 |
acacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttg |
432 |
Q |
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| T |
40672285 |
tcacatgaacaaggtgttgcagtttaccttggcagatgtgactcaagccatatgtgtttctcacacaagcaaggaaaacacagtgttacggtcaggtttg |
40672186 |
T |
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| Q |
433 |
gcgccggagaaggtttttgtaatacctaatgctgttga |
470 |
Q |
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| || || || |||||||||||||||||||| ||||| |
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| T |
40672185 |
ccaccagataaagtttttgtaatacctaatgccgttga |
40672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 20685373 - 20685601
Alignment:
| Q |
15 |
aaatgtaactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgtt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| | |||||| ||| | ||| ||||| |
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| T |
20685373 |
aaatgtaactaccaatgatcaggtggtggttgtaacccatgcttatggaaaatgctctggggttagacacatgacggatggtttgaaagtgtaccatgtt |
20685472 |
T |
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| Q |
115 |
ccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgc |
214 |
Q |
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||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
20685473 |
ccacggagaccattctttaatatgaatacatttccaactttatatggaacactcccaattataagaactattttcactcgagaaagaattaccgttgtgc |
20685572 |
T |
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| Q |
215 |
atggacatcaaaccttttcaacactttgt |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20685573 |
atggacatcaaaccttttcaacactttgt |
20685601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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