View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_70 (Length: 250)
Name: NF11121_low_70
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 211968 - 212118
Alignment:
| Q |
15 |
aacttatctgttacactatagaccactaaacttgaaagtttatgatattttcacaattgatttaaataattaatctcataaagagtttcaggtaaattct |
114 |
Q |
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| T |
211968 |
aacttatctgttacactatagaccactaaacttcaaagtttatgatattttcacaattgatttaaataattaatctcataaagagtttcaggtaaattct |
212067 |
T |
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| Q |
115 |
aaattgaaactataagatttgaaattttgtaactccaactataatttatag |
165 |
Q |
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| T |
212068 |
aaattgaaactataagatttaaaattttgtaactccaactataatttatag |
212118 |
T |
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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 212143 - 212236
Alignment:
| Q |
156 |
taatttatagaaccttagaatgaaagacacacatacctaaacaagcacatttgatcattattatatcctcaaagtttcaagtagaaaaataatga |
250 |
Q |
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||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
212143 |
taatttatacaaccttagaatgaaagacacac-taactaaacaagcacatttgatcattattatatcctcaaagtttcaagtagaaaaataatga |
212236 |
T |
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