View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_71 (Length: 247)

Name: NF11121_low_71
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_71
NF11121_low_71
[»] chr5 (14 HSPs)
chr5 (20-127)||(37412501-37412608)
chr5 (20-247)||(37697615-37697842)
chr5 (20-247)||(37824723-37824950)
chr5 (20-247)||(37533928-37534155)
chr5 (20-247)||(37640700-37640927)
chr5 (20-247)||(37712452-37712679)
chr5 (20-247)||(37595152-37595379)
chr5 (20-246)||(37436535-37436761)
chr5 (162-247)||(37412419-37412504)
chr5 (28-247)||(37399917-37400136)
chr5 (67-171)||(37429616-37429720)
chr5 (20-247)||(37381440-37381667)
chr5 (20-247)||(37703496-37703723)
chr5 (73-247)||(37392066-37392237)
[»] chr4 (2 HSPs)
chr4 (20-247)||(24216845-24217072)
chr4 (25-245)||(16841983-16842203)
[»] chr3 (1 HSPs)
chr3 (20-247)||(14553866-14554093)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 37412608 - 37412501
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37412608 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttac 37412509  T
Q  120 aataaggt 127  Q
    ||||||||    
T  37412508 aataaggt 37412501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37697615 - 37697842
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| |||||||||||||||||||||||||||||||||  |||  ||||||| || ||||||||||||||||||||||||||| || |||||||||  ||    
T  37697615 tcaattgacctatggaataaggaatttcacctgagaaagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttggaagttgacc 37697714  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||| | |||||||    
T  37697715 actaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtttcgtagacta 37697814  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37697815 agagaaaccaaagaggatgacaaattct 37697842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37824723 - 37824950
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| ||||||||||||||||||||||||||||| |||  ||   ||||||| |||||||||||||||||||||||||||||| || |||||||||  ||    
T  37824723 tcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggtccaagtaccttagaggagtgctccagttggactttggaagttgacc 37824822  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||| | |||||||    
T  37824823 actaaggttatgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtttcgtagacta 37824922  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37824923 agagaaaccaaagaggatgacaaattct 37824950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37533928 - 37534155
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| ||||||||||||||||||||||||||||| |||  ||  ||||||||  ||||||||||||||||||||||||||||| || |||||||||  ||    
T  37533928 tcaattgacctatggaataaggaatttcacctgaaaaagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgacc 37534027  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  ||||||||||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |    |||||||    
T  37534028 actaaggttatcattagatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctgatagacta 37534127  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37534128 agagaaaccaaagaggatgacaaattct 37534155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37640700 - 37640927
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| |||||||||||||||||||||||||||||||||  || ||||  ||| | |||||||||||||||||||||||||||| || |||||||||  ||    
T  37640700 tcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaagttgacc 37640799  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| || | |||||||    
T  37640800 actaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttttcgtagacta 37640899  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37640900 agagaaaccaaagaggatgacaaattct 37640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37712452 - 37712679
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| ||||||||||||||||||||||||||||| |||  ||   |||||||  ||||||||||||||||||||||||||||| || |||||||||  ||    
T  37712452 tcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgacc 37712551  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | |||||||| || ||||||||||||   |||||  | |||||||    
T  37712552 actaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgatatatttccttgcaacacagtgtctcgtagacta 37712651  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37712652 agagaaaccaaagaggatgacaaattct 37712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37595152 - 37595379
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| ||||||||||||||||||||||||||||| |||  || ||||  ||| | |||||||||||||||||||||| ||||| || |||||||||  ||    
T  37595152 tcaattgacctatggaataaggaatttcacctgaaaaagcagataaacggaggttcaagtaccttagaggagtgctcaagttggactttggaagttgacc 37595251  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  |||||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  |||||||||||||| | |||||| | ||||  |    
T  37595252 actaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaacccagtgtttcgtagaaga 37595351  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| ||||||||| |||||||    
T  37595352 agagaaaccaaagaggatgaaaaattct 37595379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 37436535 - 37436761
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| |||||||||||||||||||||||||||||||||  || ||||  ||| | |||||||||||||||||||||||||||| || |||||||||  ||    
T  37436535 tcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaagttgacc 37436634  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||||    ||||||||    
T  37436635 actaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactgagtggatgctagacta 37436734  T
Q  220 agagagaccagagaggatgacaaattc 246  Q
    ||||| |||| ||| ||||||||||||    
T  37436735 agagaaaccaaagaagatgacaaattc 37436761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 37412504 - 37412419
Alignment:
Q  162 aggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 247  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412504 aggtaaagagggaatgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 37412419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 37400136 - 37399917
Alignment:
Q  28 cctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttccaataaggt 127  Q
    ||||||||||| |||||||||||||| |||  ||   |||||||  ||||||||||||||||||||||||||||| || |||||||||  ||| ||||||    
T  37400136 cctatggaatagggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggt 37400037  T
Q  128 cctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagac 227  Q
      | |||| |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |    |||||||||||| ||    
T  37400036 tttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctgatagactaagagaaac 37399937  T
Q  228 cagagaggatgacaaattct 247  Q
    || |||||||||||||||||    
T  37399936 caaagaggatgacaaattct 37399917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 37429616 - 37429720
Alignment:
Q  67 gagagatccaagtaccttagaggagtgctccagttgaacattggaagttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggta 166  Q
    ||||| |||||||||||||| ||||||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||||||||||||||||||||| ||||    
T  37429616 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 37429715  T
Q  167 aagag 171  Q
    |||||    
T  37429716 aagag 37429720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 37381667 - 37381440
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    ||||||| ||||||||||||||||||||||||||||||   ||   |||||| ||||||||||| | |||||||||||||||| |  | |||||||  |     
T  37381667 tcaactggcctatggaataaggaatttcacctgagaaaggggtgcgagagaggtccaagtacctcaaaggagtgctccagttggatttcggaagttgact 37381568  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
      | || |  | ||||||||| |||||||||  ||| ||||||||||||||| | | ||||||||  |||||||||||||| | ||| |  ||||||| |    
T  37381567 gctcagatatttattagatgataaatctagtgtttggagattaggtaaagagaggatgtcacttgacaaatttccttgcaacccagtttctcctagacca 37381468  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37381467 agagaaaccaaagaggatgacaaattct 37381440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37703496 - 37703723
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| ||||||||||||||||||||||||||||| |||  ||   ||||||| | |||||| |||||||||| |||||||||| |  |||||||||  ||    
T  37703496 tcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggttcaagtatcttagaggagagctccagttggattttggaagttgacc 37703595  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||||  | |||  |||||||||| | |  ||||||||||||||||||| | | ||||||||  ||||||||||||||   ||| |    |||||||    
T  37703596 actaaggttataattgaatgacaaatccaatctttgaagattaggtaaagagaggatgtcacttgacaaatttccttgcaactcagtttctgatagacta 37703695  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  37703696 agagaaaccaaagaggatgacaaattct 37703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 37392237 - 37392066
Alignment:
Q  73 tccaagtaccttagaggagtgctccagttgaacattggaagttttccaataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagg 172  Q
    |||||||||||||||||||||||||||||  |  |||||||||| ||  |||| || | |||   |||||||||||||  |||||||||||||||||||     
T  37392237 tccaagtaccttagaggagtgctccagtttgattttggaagtttaccgctaagttcattatt---tgacaaatctagtctttgaagattaggtaaagaga 37392141  T
Q  173 gaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagagagaccagagaggatgacaaattct 247  Q
    | | | ||||||  |||||||||||||| | | | |  ||||| |||||||| |||| ||||||||||| |||||    
T  37392140 ggatggcacttgacaaatttccttgcaacccaatttctcctagcctaagagaaaccaaagaggatgacacattct 37392066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 24217072 - 24216845
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||||||||| || || || | ||||||||||||||||  ||  |||||||| |||||||||||||| ||||||||||||||| || |||||| ||| ||    
T  24217072 tcaactgaccaatagagtatgaaatttcacctgagaaaccagagaaagagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttacc 24216973  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    |  |||||| | ||| |||||||||||||||| ||||||||| ||||||||| | | ||||||||  | |||||||||||| | ||||    ||||||||    
T  24216972 acgaaggtcttgattcgatgacaaatctagtttttgaagatttggtaaagagaggatgtcacttgacatatttccttgcaatccagtggatgctagacta 24216873  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  24216872 agagaaaccaaagaggatgacaaattct 24216845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 16842203 - 16841983
Alignment:
Q  25 tgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttccaataa 124  Q
    |||||||||||||| |  ||||| |||||||||  |||   |||||| | |||||||||||||||||||||||||||| |  |||||||||  ||| |||    
T  16842203 tgacctatggaataggagatttctcctgagaaagcagtatgagagaggtacaagtaccttagaggagtgctccagttggattttggaagttgaccactaa 16842104  T
Q  125 ggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagactaagaga 224  Q
    |||| | ||||  |||||||||||||  ||||||||| |  |||||| | | |||||||   |||||||||||||||| ||||||  |||||  ||||||    
T  16842103 ggtcttgattatgtgacaaatctagtctttgaagatttgacaaagagagtatgtcacttaacaaatttccttgcaaaccagtgtttgctagatgaagaga 16842004  T
Q  225 gaccagagaggatgacaaatt 245  Q
     |||| |||||||||||||||    
T  16842003 aaccaaagaggatgacaaatt 16841983  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 14553866 - 14554093
Alignment:
Q  20 tcaactgacctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttttcc 119  Q
    |||| |||||||||||||||||||||||||||||||||  ||   ||  ||| | |||||||||||||||||| ||||||||| |  |||||||||  ||    
T  14553866 tcaattgacctatggaataaggaatttcacctgagaaagcagagtaatggaggtacaagtaccttagaggagtactccagttggattttggaagttgacc 14553965  T
Q  120 aataaggtcctcattagatgacaaatctagttcttgaagattaggtaaagagggaacgtcacttgctaaatttccttgcaaactagtgttccctagacta 219  Q
    | ||||  | ||||||  |  ||||||||||| ||||||||| || |||||| | | ||||||||  |||||||||||||| |  |||||  ||||||||    
T  14553966 actaagaccatcattacctaccaaatctagtttttgaagatttggcaaagagagtatgtcacttgacaaatttccttgcaacccggtgtttgctagacta 14554065  T
Q  220 agagagaccagagaggatgacaaattct 247  Q
    ||||| |||| |||||||||||||||||    
T  14554066 agagaaaccaaagaggatgacaaattct 14554093  T

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