View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_72 (Length: 245)

Name: NF11121_low_72
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_72
NF11121_low_72
[»] chr4 (2 HSPs)
chr4 (19-182)||(14076387-14076550)
chr4 (124-158)||(40285707-40285741)
[»] scaffold0074 (1 HSPs)
scaffold0074 (124-174)||(45717-45767)
[»] scaffold0008 (1 HSPs)
scaffold0008 (124-175)||(49373-49424)
[»] chr3 (1 HSPs)
chr3 (124-175)||(4222208-4222259)
[»] scaffold0009 (1 HSPs)
scaffold0009 (124-174)||(19805-19855)
[»] chr6 (2 HSPs)
chr6 (124-158)||(15496995-15497029)
chr6 (124-154)||(32201843-32201873)
[»] chr8 (2 HSPs)
chr8 (125-174)||(28566172-28566221)
chr8 (125-174)||(28573795-28573844)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 14076550 - 14076387
Alignment:
Q  19 gaaaactccacttctccacatttaataatgtgtgtggtccaataactatgctatttaaccccaaaaaagacctgtcatcactttattttattttggttac 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14076550 gaaaaccccacttctccacatttaataatgtgtgtggtccaataactaggctatttaaccccaaaaaagacctctcatcactttattttattttggttac 14076451  T
Q  119 aattcttttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaaccataccaa 182  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14076450 aattcttttaaaaagttaaactaacccacctaaattgacaccgaaaagaatcgaaccaaaccaa 14076387  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 40285741 - 40285707
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaaca 158  Q
    |||||||||||||||||||||||||||||||||||    
T  40285741 ttttaagaagttaaactaacccacctaaattaaca 40285707  T

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Target: scaffold0074 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 45717 - 45767
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaac 174  Q
    ||||||||||||||||||||||||||||||| |||||  | ||||||||||    
T  45717 ttttaagaagttaaactaacccacctaaattgacaccagagagaatcgaac 45767  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 49424 - 49373
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaacc 175  Q
    ||||||||||||||| |||||||| |||||| |||||| | |||||||||||    
T  49424 ttttaagaagttaaattaacccacttaaattgacaccggagagaatcgaacc 49373  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 4222259 - 4222208
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaacc 175  Q
    |||||||||||||||||||| |||||||||| |||||  | |||||||||||    
T  4222259 ttttaagaagttaaactaactcacctaaattgacaccagagagaatcgaacc 4222208  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 19805 - 19855
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaac 174  Q
    |||||||||| ||||||| |||||| ||||||||| || ||||||||||||    
T  19805 ttttaagaagctaaactagcccacccaaattaacatcggaaagaatcgaac 19855  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 15496995 - 15497029
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaattaaca 158  Q
    ||||||||||||||||||||||| |||||||||||    
T  15496995 ttttaagaagttaaactaacccatctaaattaaca 15497029  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 154
Target Start/End: Original strand, 32201843 - 32201873
Alignment:
Q  124 ttttaagaagttaaactaacccacctaaatt 154  Q
    |||||||||||||||||||||||||||||||    
T  32201843 ttttaagaagttaaactaacccacctaaatt 32201873  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 28566221 - 28566172
Alignment:
Q  125 tttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaac 174  Q
    |||||||| ||||| |||||||||||||||| |||| || ||||||||||    
T  28566221 tttaagaaattaaattaacccacctaaattagcaccaaagagaatcgaac 28566172  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 28573844 - 28573795
Alignment:
Q  125 tttaagaagttaaactaacccacctaaattaacaccgaaaagaatcgaac 174  Q
    |||||||| ||||| |||||||||||||||| |||| || ||||||||||    
T  28573844 tttaagaaattaaattaacccacctaaattagcaccaaagagaatcgaac 28573795  T

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