View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_87 (Length: 238)
Name: NF11121_low_87
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_87 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7614585 - 7614807
Alignment:
| Q |
1 |
atttttatctttgtctgataataaccatatgaatatagtttctaaaattgttcattatttcaattttgtagggagatcgtattagttttagtgggcaagt |
100 |
Q |
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| T |
7614585 |
atttttatctttgtctgatattaaccatatgaatatagtttctaaaattgttcattatttcaactttgtagggagatcgtattagttttagtgggcaagt |
7614684 |
T |
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| Q |
101 |
acaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttcaaattatcttagcaaatgcatctattccattggattg |
200 |
Q |
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| T |
7614685 |
acaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttcaaattatcttagcaaatgcatctattccattggattg |
7614784 |
T |
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| Q |
201 |
ggtagcaatgattatcttaacaa |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
7614785 |
ggtagcaatgattaccttaacaa |
7614807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 8491751 - 8491935
Alignment:
| Q |
39 |
tttctaaaattgttcattatttcaattttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatt |
138 |
Q |
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| T |
8491751 |
tttctataattgttaattatttcaactttgtagggagatcgtattagttttagtggtcaagtacaaaactaccaaaagacagtgtcccaagtgataaatt |
8491850 |
T |
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| Q |
139 |
tgcttggagatgaggatacagcttcaaattatcttagcaaatgcatctattccattggattgggtagcaatgattatcttaacaa |
223 |
Q |
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| T |
8491851 |
tgcttggagattagaatacagcttcaaattatcttagcaaatgcatctattccattggattgggtagcaatgattaccttaacaa |
8491935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 4560 - 4400
Alignment:
| Q |
64 |
ttttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttc |
163 |
Q |
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||||||||||| | || ||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||| | || ||| | |
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| T |
4560 |
ttttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgc |
4461 |
T |
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| Q |
164 |
aaattatcttagcaaatgcatctattccattggattgggtagcaatgattatcttaacaat |
224 |
Q |
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| T |
4460 |
aaattatcttagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaat |
4400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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