View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_93 (Length: 225)
Name: NF11121_low_93
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_93 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 2772323 - 2772139
Alignment:
| Q |
23 |
aatcagtttagaacctgcaatgtcagctcatccaataagctgcgttatgtagtgttgctaagttaggaagcttccagtggaagtaggaaaactttcagca |
122 |
Q |
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| T |
2772323 |
aatcagtttagaacctgcaatgtcagctcatccaataagctgcgtta------------------ggaagcttccagtggaagtaggaaaactttcagca |
2772242 |
T |
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| Q |
123 |
cctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaatcattgcagaaatttggtcattccacatttccaca |
222 |
Q |
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| T |
2772241 |
cctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaatcattgcagaaatttggtcattccacatttccaca |
2772142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 2794799 - 2794706
Alignment:
| Q |
82 |
aagttaggaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaag |
175 |
Q |
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| T |
2794799 |
aagttaggaagggtccactggaatcacgaaaagtttcagcacctaataggtgagctgatggaccacgatcctttgaagagaatgtggtagcaag |
2794706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 2834450 - 2834536
Alignment:
| Q |
99 |
gtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaa |
187 |
Q |
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| T |
2834450 |
gtggaagtaggaatgctttcaacacctgataagtgagttgatggaccatgatccttt--agagaatgtggaagtaagtggtttcttgaa |
2834536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 2801159 - 2801068
Alignment:
| Q |
67 |
ttatgtagtgttgctaagttaggaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaa |
158 |
Q |
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| T |
2801159 |
ttatgtagtattgctgagttaggaagagtccaatggaagtaggaatagatttaatacctaataagagagttgatggaccatgatcctttaaa |
2801068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 2794859 - 2794825
Alignment:
| Q |
6 |
gtggccatgggtgttgaaatcagtttagaacctgc |
40 |
Q |
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| T |
2794859 |
gtggccatggatgttgaaatcagtttagaacctgc |
2794825 |
T |
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