View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11122_high_4 (Length: 383)
Name: NF11122_high_4
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11122_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1846766 - 1846531
Alignment:
| Q |
1 |
tcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgcttagcagaagttgcatcaactcgttcctgaattttcagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1846766 |
tcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgcttagcagaagttgcatcaactcgttcctgaattttcagcac |
1846667 |
T |
|
| Q |
101 |
tgttttaaggtatatcaatcttataacaataacagtagtaactcaccaatcccctgacatatttgcaagcttccaagctctgctgagcattcaaaacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1846666 |
tgttttaaggtatatcaatcttataacaataacaacagtaactcaccaatcccctgacatatttgcaagcttccaagctctgctgagtattcaaaacacc |
1846567 |
T |
|
| Q |
201 |
agtcttgagtttagaaaaccatttttccgtgacagc |
236 |
Q |
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||||||||||| || |||||||||||||||||||| |
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| T |
1846566 |
agtcttgagttcaggcaaccatttttccgtgacagc |
1846531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 5342583 - 5342304
Alignment:
| Q |
3 |
aaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgcttagcagaagttgcatcaactcgttcctgaa-ttttcagcact |
101 |
Q |
| |
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||||| ||||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
5342583 |
aaatttaacaattgtgatgaagtttataatgtagcaatatatgtaaataaaacgtgcttagcagaagttgcatcaagtcatttctgaaattttcagcact |
5342484 |
T |
|
| Q |
102 |
gttttaaggtatatcaatcttataacaataacagtagtaactcaccaatcccctgacatatttgcaagcttccaagctctgctgagcattcaaaacacca |
201 |
Q |
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| ||||||| |||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5342483 |
gctttaagggatatcaatcttataaccataagagcagtaactcaccaatccccaaacatatttgcaagcttccaaactctgctgagcattcaaaacacca |
5342384 |
T |
|
| Q |
202 |
gtcttgagtttagaaaaccatttttccgtgacagctctttcttgttctgctgtcaaatttaaagaaaaataggttgtcct |
281 |
Q |
| |
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|||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
5342383 |
gtcttgagttcaggcaaccatttttccatgacagctctttcttgttctgctgccaaatttaaagaaaaattggtcgtcct |
5342304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 18200168 - 18200439
Alignment:
| Q |
1 |
tcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgcttagcagaagttgcatcaactcgttcctgaa-ttttcagca |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
18200168 |
tcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgcttatcagaagttgcatcaactggttcctgaaattttcagca |
18200267 |
T |
|
| Q |
100 |
ctgttttaaggtatatcaatcttataacaataacagtagtaactcaccaatcccctgacatatttgcaagcttccaagctctgctgagcattcaaaacac |
199 |
Q |
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|||||||||| ||||||||||||||| |||||| | | |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
18200268 |
ctgttttaagagatatcaatcttataataataacggcaataactcaccaatccccaaacatatttgcaagctttcaagctctgccaagcattcaaaacac |
18200367 |
T |
|
| Q |
200 |
cagtcttgagtttagaaaaccatttttccgtgacagctctttcttgttctgctgtcaaatttaaagaaaaat |
271 |
Q |
| |
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|| |||| |||| || ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
18200368 |
caatcttaagttcaggcaaccatttttctgtgatagctctttcttgttctgctgccaaatttaaagaaaaat |
18200439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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