View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11122_high_5 (Length: 292)
Name: NF11122_high_5
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11122_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 25744040 - 25743944
Alignment:
| Q |
18 |
attaacataatcagtgaagtcatagaaggactatagatttaattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
114 |
Q |
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| T |
25744040 |
attaacataatcagtgaagtcatagaaggactatagttttcattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
25743944 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 25743866 - 25743778
Alignment:
| Q |
192 |
tcatacaacaacacaaaataaaagacaagtcagttatcctaaaatcactagattgaaaatctacctttcaacgctaggggcacaggttc |
280 |
Q |
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| T |
25743866 |
tcatacaacaacacaaaataaaagacaagtcagttatcctagaatcacttgattgaaaatctacctttcaacgctaggggcataggttc |
25743778 |
T |
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