View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11122_low_1 (Length: 851)
Name: NF11122_low_1
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11122_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 793; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 10 - 835
Target Start/End: Original strand, 51498668 - 51499493
Alignment:
| Q |
10 |
gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttcgttcatata |
109 |
Q |
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| T |
51498668 |
gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttagttcatata |
51498767 |
T |
|
| Q |
110 |
acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt |
209 |
Q |
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| T |
51498768 |
acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt |
51498867 |
T |
|
| Q |
210 |
gaagccatggcatccttgaatgaggtacattcatgtcttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg |
309 |
Q |
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| T |
51498868 |
gaagccatggcatccttgaatgaggtacattcatgttttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg |
51498967 |
T |
|
| Q |
310 |
gcatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtnnnnnnn |
409 |
Q |
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| T |
51498968 |
ccatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtaaaaaaa |
51499067 |
T |
|
| Q |
410 |
gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag |
509 |
Q |
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| T |
51499068 |
gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag |
51499167 |
T |
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| Q |
510 |
tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg |
609 |
Q |
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| T |
51499168 |
tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg |
51499267 |
T |
|
| Q |
610 |
acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc |
709 |
Q |
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| T |
51499268 |
acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc |
51499367 |
T |
|
| Q |
710 |
aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctggtgcaatccgcgtgcgtgatgagatgctcttggcagcctgt |
809 |
Q |
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| T |
51499368 |
aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctggtgcaatccgcgtgcgtgatgagatgctcttggcagcctgt |
51499467 |
T |
|
| Q |
810 |
aagtacatgcaaccttgagagattat |
835 |
Q |
| |
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| T |
51499468 |
aagtacatgcaaccttgagagattat |
51499493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 813
Target Start/End: Complemental strand, 43206023 - 43205925
Alignment:
| Q |
715 |
agtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctggtgcaatccgcgtgcgtgatgagatgctcttggcagcctgtaagt |
813 |
Q |
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|||||||||||||||||||||| || || |||||||||||| | | || || || |||||||| || | |||||| ||||| | ||||||||||||| |
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| T |
43206023 |
agtccaacaatgcttacattttcccaggctttggtttgggtatagtgatgtcgggagcaatccgagtacatgatgatatgcttctagcagcctgtaagt |
43205925 |
T |
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