View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11122_low_2 (Length: 652)
Name: NF11122_low_2
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11122_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 2143143 - 2143775
Alignment:
| Q |
1 |
cttatcactatgaaactagaacttgcaccaccacgaaaccattgcgcgttacgaagaggccaggagacaggacaaaccagatctaaaaacgaaattgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2143143 |
cttatcactatgaaactagaacttgcaccaccacgaaaccattgcgcattacgaagaggccaggagacaggacaaaccagatctaaaaacgaaattgata |
2143242 |
T |
|
| Q |
101 |
cataaaaccgaagcggatatgaataagccttgcttttaagaaatattttcacatctttatttcttccaaatcttaatgggagccccgtccccaattttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2143243 |
cataaaaccgaagcggatatgaataagccttacttttaagaaatattttcacatctttatttcttccaaatcttaatgggaaccccgtccccaattttaa |
2143342 |
T |
|
| Q |
201 |
gggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnnntcgtttttaaagtgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2143343 |
gggttcgtcaatggtcctctctaaatgaccttccatagcaggtataaaacaaaaattgtttcatgaccccacacaacaaaaaaaatcgtttttaaagtgc |
2143442 |
T |
|
| Q |
301 |
agtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttttctaaagtatatat |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2143443 |
agtcacaaagattacttatgcgcccctccatatagaaccaaagtatctaggtacaaaatcatttcagctagattccttcttctttttctaaagtatatat |
2143542 |
T |
|
| Q |
401 |
acaacctgattccttctacacgaactagtaatgagcatccagtcnnnnnnnnnnnntctaatggacaagttaatgggactcatattggatcttatctttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2143543 |
acaacctgattccttctacacgaactagtaatgagcgtccagtcaaaaataaaaaatctaatagacaagctaatgggactcatattggatgttatcttt- |
2143641 |
T |
|
| Q |
501 |
nnnnnnnnnnattttaaaaactcggtatccgatccaattggatcttatcttgttttggtttatcac---cnnnnnnnnctttccagtgacaatagtttat |
597 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
2143642 |
---tttttttttttttaaaactcggtatccgatccaattggatcttatcttattttggtttatcaccttcttttttttttttccagtgacaatagtttat |
2143738 |
T |
|
| Q |
598 |
aattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2143739 |
aattcaccgtgaaaatgattttgaaatacaacattta |
2143775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 187 - 498
Target Start/End: Complemental strand, 30935547 - 30935237
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnnnt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||| ||||| | | |
|
|
| T |
30935547 |
gtccccaattttaagggttcatcaatggtcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgatcccacccaacaaaaaaaat |
30935448 |
T |
|
| Q |
287 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
30935447 |
cgtttttaaagtgcagtcacaaagattacttatgcgcccctccatataaaaccaa-gtatctaggtagaaaatcatttcagctagattccttcttctttt |
30935349 |
T |
|
| Q |
387 |
tctaaagtatatatacaacctgattccttctacacgaactagtaatgagcatccagtcnnnnnnnnnnnntctaatggacaagttaatgggactcatatt |
486 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30935348 |
tctaaagttaatatacaacctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatatt |
30935249 |
T |
|
| Q |
487 |
ggatcttatctt |
498 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30935248 |
ggatcttatctt |
30935237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 30935251 - 30935152
Alignment:
| Q |
537 |
attggatcttatcttgttttggtttatcaccnnnnnnnnctttccagtgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30935251 |
attggatcttatcttgttttggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacattta |
30935152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 187 - 498
Target Start/End: Complemental strand, 32186367 - 32186057
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnnnt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||| ||||| | | |
|
|
| T |
32186367 |
gtccccaattttaagggttcatcaatggtcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgatcccacccaacaaaaaaaat |
32186268 |
T |
|
| Q |
287 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
386 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
32186267 |
catttttaaagtgcagtcacaaagattacttatgcgcccctccatataaaaccaa-gtatctaggtagaaaatcatttcagctagattccttcttctttt |
32186169 |
T |
|
| Q |
387 |
tctaaagtatatatacaacctgattccttctacacgaactagtaatgagcatccagtcnnnnnnnnnnnntctaatggacaagttaatgggactcatatt |
486 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
32186168 |
tctaaagttaatatacaacctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatatt |
32186069 |
T |
|
| Q |
487 |
ggatcttatctt |
498 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32186068 |
ggatcttatctt |
32186057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 187 - 498
Target Start/End: Complemental strand, 31677336 - 31677006
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacac--nnnnnnnnnn |
284 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||||||||| || ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
31677336 |
gtccccaattttaaggattcatcaatggttctctctaaatgacctttcatagcaggtttaaaacaaaaattgtttcatgaccccacacaatatttttttt |
31677237 |
T |
|
| Q |
285 |
ntcgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttc-----------aactagat |
373 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| | |||||| |
|
|
| T |
31677236 |
tttttttttaaagtgcagtcacaaagattacttatgtgcccctccatataacaccaaagtatccaggtacaaaattatttctctcagttcatagctagat |
31677137 |
T |
|
| Q |
374 |
tccttcttctttttctaaagtatatatacaacctgattccttctacacgaac------tagtaatgagcatccagtcnnnnnnnnnnnntctaatggaca |
467 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||| |
|
|
| T |
31677136 |
tccttcttctttttctaaagttaatatacaacctgattccttctacaccaactagtaatagtaatgagcatccagttaaaaataaaaaatctaatgaaca |
31677037 |
T |
|
| Q |
468 |
agttaatgggactcatattggatcttatctt |
498 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
31677036 |
agctaatgggactcatattggatcttatctt |
31677006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 303 - 498
Target Start/End: Original strand, 622610 - 622816
Alignment:
| Q |
303 |
tcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttc-----------aactagattccttcttctttttctaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
622610 |
tcacaaagattacttatgtgcccctccatataacaccaaagtatctaggtacaaaatcatttctctcttctcatagctagattccttcttctttttctaa |
622709 |
T |
|
| Q |
392 |
agtatatatacaacctgattccttctacacgaactagtaatgagcatccagtcnnnnnnnnnnnntctaatggacaagttaatgggactcatattggatc |
491 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
622710 |
agttaatatacaatctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagctaatgggactcatattggatc |
622809 |
T |
|
| Q |
492 |
ttatctt |
498 |
Q |
| |
|
||||||| |
|
|
| T |
622810 |
ttatctt |
622816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 537 - 634
Target Start/End: Original strand, 622802 - 622899
Alignment:
| Q |
537 |
attggatcttatcttgttttggtttatcaccnnnnnnnnctttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
622802 |
attggatcttatcttgttttggtttatcaccttttttttctttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaaaattta |
622899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 31677020 - 31676921
Alignment:
| Q |
537 |
attggatcttatcttgttttggtttatcaccnnnnnnnn--ctttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31677020 |
attggatcttatcttgttttggtttatcaccttttttttttctttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaacattta |
31676921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 32186071 - 32185972
Alignment:
| Q |
537 |
attggatcttatcttgttttggtttatcaccnnnnnnnnctttccagtgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32186071 |
attggatcttatcttgttttggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacattta |
32185972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 622536 - 622612
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttca |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||||| || |||| | ||||||||||||||||| |
|
|
| T |
622536 |
gtccccaattttaagggttcatcaatggtcctctccaaatgacattccatagaaggtttaaaacaaaaattgtttca |
622612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 187 - 498
Target Start/End: Complemental strand, 7663790 - 7663480
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnnnt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||| | | |
|
|
| T |
7663790 |
gtccccaattttaagggttcatcaatgatcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgaccccacccaacaaaaaaaat |
7663691 |
T |
|
| Q |
287 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||| ||| |||||| | ||||||||||||||||||| |
|
|
| T |
7663690 |
cgtttttaaagtgcagtcacaaagattacttatgcacccctctatataaaaccaa-gtatctaggtagaaaatcatttgagctagattccttcttctttt |
7663592 |
T |
|
| Q |
387 |
tctaaagtatatatacaacctgattccttctacacgaactagtaatgagcatccagtcnnnnnnnnnnnntctaatggacaagttaatgggactcatatt |
486 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
7663591 |
tctaaagttaatatacaacctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatatt |
7663492 |
T |
|
| Q |
487 |
ggatcttatctt |
498 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7663491 |
ggatcttatctt |
7663480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 7663494 - 7663395
Alignment:
| Q |
537 |
attggatcttatcttgttttggtttatcaccnnnnnnnnctttccagtgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacattta |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663494 |
attggatcttatcttgttttggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacattta |
7663395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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