View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11122_low_3 (Length: 505)

Name: NF11122_low_3
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11122_low_3
NF11122_low_3
[»] chr4 (3 HSPs)
chr4 (18-493)||(44395672-44396147)
chr4 (402-491)||(53395498-53395587)
chr4 (300-356)||(53395396-53395452)
[»] chr1 (1 HSPs)
chr1 (280-491)||(6971021-6971232)
[»] chr2 (1 HSPs)
chr2 (405-491)||(11449895-11449981)
[»] chr7 (3 HSPs)
chr7 (396-478)||(1800807-1800889)
chr7 (270-307)||(1800681-1800718)
chr7 (102-143)||(1800513-1800554)
[»] chr6 (2 HSPs)
chr6 (394-478)||(2842237-2842321)
chr6 (402-478)||(2828887-2828963)


Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 44395672 - 44396147
Alignment:
Q  18 gattataaaggtgtcaaggtttattgggtttgtagcaaagttatgtcacaatcaagatccatgccttattatcaagaacaagagaagagattctacaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44395672 gattataaaggtgtcaaggtttattgggtttgtagcaaagttatgtcacaatcaagatccatgccttattatcaagaacaagagaagagattctacaaac 44395771  T
Q  118 tcacttttcataaaaagtatagagatacaataactggttcatatttggatcatgtgatgaaagaagggaaagagattcgtttgaggaacagacagaggaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44395772 tcacttttcataaaaagtatagagatacaataactggttcatatttggatcatgtgatgaaagaagggaaagagattcgtttgaggaacagacagaggaa 44395871  T
Q  218 attgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgcaacttttgaaacaatggct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44395872 attgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgcaacttttgaaacaatggct 44395971  T
Q  318 atggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggtaaagcttggaaaaggggtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44395972 atggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggtaaagcttggaaaaggggtt 44396071  T
Q  418 atttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44396072 atttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgt 44396147  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 491
Target Start/End: Original strand, 53395498 - 53395587
Alignment:
Q  402 gcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgat 491  Q
    ||||||||||| |||||| | |||| |||||||||||| ||||| ||||| |  |||||||||||||||||||||||  | |||||||||    
T  53395498 gcttggaaaagaggttatcttctttatggtcctccaggaactggaaaatctagcatgattgctgctatggctaattttcttggttatgat 53395587  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 53395396 - 53395452
Alignment:
Q  300 acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttg 356  Q
    |||||||| ||| |||||||||| |||  |||||||||||||||||| |||||||||    
T  53395396 acttttgatacattggctatggatcctatgaagaagaaagagattatggaagatttg 53395452  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 280 - 491
Target Start/End: Original strand, 6971021 - 6971232
Alignment:
Q  280 ttgtttttgaacatcctgcaacttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaagga 379  Q
    |||| |||||||||||| |||| ||||||||| | ||||||||     |||||||||||  ||| ||||| ||| |  |||| |||||||||  |   ||    
T  6971021 ttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaagctggtga 6971120  T
Q  380 tttttatgctaggattggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttg 479  Q
     || ||||| || ||||| |  ||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||| ||||| ||||||    
T  6971121 attctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttg 6971220  T
Q  480 ttgggttatgat 491  Q
    || || ||||||    
T  6971221 ttaggctatgat 6971232  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 405 - 491
Target Start/End: Original strand, 11449895 - 11449981
Alignment:
Q  405 tggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgat 491  Q
    |||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||| ||||||||||||| ||||  ||||||||    
T  11449895 tggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattggtgctatggctaatctgttaagttatgat 11449981  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 478
Target Start/End: Original strand, 1800807 - 1800889
Alignment:
Q  396 ggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaattt 478  Q
    ||||| ||||||||| | ||||||||||||| |||||||||||| || |||||||| || ||||| || |||||||| |||||    
T  1800807 ggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaattt 1800889  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 1800681 - 1800718
Alignment:
Q  270 tggagtcacattgtttttgaacatcctgcaacttttga 307  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1800681 tggagtcacattgtttttgaacatcctgcgacttttga 1800718  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 1800513 - 1800554
Alignment:
Q  102 aagagattctacaaactcacttttcataaaaagtatagagat 143  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||    
T  1800513 aagagatactataaactcacttttcataaaaagcatagagat 1800554  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 2842237 - 2842321
Alignment:
Q  394 ttggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaattt 478  Q
    |||| |||||||||||| | |||||| ||||||||||||||||||| || |||||||| || |||||  | ||||| ||||||||    
T  2842237 ttggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatctaccatgatatcggctattgctaattt 2842321  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 2828887 - 2828963
Alignment:
Q  402 gcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaattt 478  Q
    ||||||||| | |||||| |||||||||||||||| || ||||| ||||| || |||||  | ||||| ||||||||    
T  2828887 gcttggaaacgtggttatctactttttggtcctcctggaactggaaaatctacgatgatatcagctattgctaattt 2828963  T

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