View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11122_low_7 (Length: 286)

Name: NF11122_low_7
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11122_low_7
NF11122_low_7
[»] chr2 (1 HSPs)
chr2 (12-128)||(1470138-1470253)
[»] chr8 (1 HSPs)
chr8 (237-281)||(7583545-7583589)
[»] chr7 (3 HSPs)
chr7 (237-281)||(18204009-18204053)
chr7 (237-281)||(5923626-5923670)
chr7 (237-281)||(40855767-40855811)
[»] chr5 (1 HSPs)
chr5 (237-281)||(4898594-4898638)
[»] chr1 (1 HSPs)
chr1 (237-281)||(19494579-19494623)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 1470253 - 1470138
Alignment:
Q  12 gagaagaacatgagcttggtcttagtttcagtatttaaaaccccaataatgcatcaaaatataaacttgaaagtgagctttaattaacacaaatacaact 111  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1470253 gagaaaaacatgagcttggtcttagtt-cagtatttaaaaccccaataatgcatcaaaatataaacttgaaagtgagctttaattaacacaaatacaact 1470155  T
Q  112 ggttgttgggcacccac 128  Q
    |||||||||||||||||    
T  1470154 ggttgttgggcacccac 1470138  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 7583589 - 7583545
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  7583589 cagtaacctaaacctagcctcctgttgggttgattctctgctgct 7583545  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 18204009 - 18204053
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  18204009 cagtaacctaaacctagcctcctgttgggttgattctctgatgct 18204053  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 5923626 - 5923670
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||    
T  5923626 cagtaacctaaacctagtctcctgttgggttgattctttgctgct 5923670  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 40855767 - 40855811
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    |||||||||||||||| |||| ||||| ||||| |||||||||||    
T  40855767 cagtaacctaaacctagcctcttgttgcgttgaatctctgctgct 40855811  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 4898594 - 4898638
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  4898594 cagtaacctaatcctagcctcctgttgggttgattctctgctgct 4898638  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 19494623 - 19494579
Alignment:
Q  237 cagtaacctaaacctaacctcctgttgggttgattctctgctgct 281  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  19494623 cagtaacctaaacctagcatcctgttgggttgattctctgctgct 19494579  T

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