View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11122_low_9 (Length: 209)
Name: NF11122_low_9
Description: NF11122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11122_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 8846861 - 8847062
Alignment:
| Q |
8 |
gatgaacaatgtttgaagttattgaagaattgtcataaagctattcctaatgatggaaaagtgattgttgtggactcaattcttcctgtatttcctgaga |
107 |
Q |
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| T |
8846861 |
gatgaacaatgtttgaagttattgaagaattgtcataaagctattcctaatgatggaaaagtgattgttgtggactcaattcttcctgtatttcctgaga |
8846960 |
T |
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| Q |
108 |
gtacaattgtagccaaaactggtttccaggctgacctcttgatgatggctcaaaatccaggtggtaaagaacgaaccaaagacgagttcatgaaattggc |
207 |
Q |
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| T |
8846961 |
gtacaattgtagccaaaactggtttccaggctgacctcttgatgatggctcaaaatccaggtggtaaagaacgaaccaaagatgagttcatgaaattggc |
8847060 |
T |
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| Q |
208 |
at |
209 |
Q |
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|| |
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| T |
8847061 |
at |
8847062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 28723578 - 28723526
Alignment:
| Q |
29 |
ttgaagaattgtcataaagctattcctaatgatggaaaagtgattgttgtgga |
81 |
Q |
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| T |
28723578 |
ttgaagaattgttacgatgctattcctaatgatggaaaggtgattgttttgga |
28723526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 28731220 - 28731168
Alignment:
| Q |
29 |
ttgaagaattgtcataaagctattcctaatgatggaaaagtgattgttgtgga |
81 |
Q |
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| T |
28731220 |
ttgaagaattgttacgatgctattcctaatgatggaaaggtgattgttttgga |
28731168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 49098103 - 49098015
Alignment:
| Q |
8 |
gatgaacaatgtttgaagttattgaagaattgtcataaagctattcctaatgatggaaaagtgattgttgtggactcaattcttcctgt |
96 |
Q |
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| T |
49098103 |
gatgaacattgcttgaagctgttgaaaaattgttacaaagctattcctgaggatggaaaggttattgtggtggacacaatccttcctgt |
49098015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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