View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_high_11 (Length: 378)
Name: NF11123_high_11
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 35354236 - 35354602
Alignment:
| Q |
1 |
tagaggcattctcccttttttcatatctcttatgnnnnnnnnnctttctttctgtcctttatatgtccctaacagcctcaacaactggatgatgtgataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354236 |
tagaggcattctcccttttttcatatctcttatgtttttttt-ctttttttctgtcctttatatgtccctaacagcctcaacaactggatgatgtgataa |
35354334 |
T |
|
| Q |
101 |
aaattcccaaggaaaaaatcgaaatccttaaaaatcaagtgtttggctttgatacnnnnnnngtaacaagccaagatccttacgaggtgtgtgcctatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35354335 |
aaattcccaaggaaaaaatcgaaatccttaaaaatcaagtgtttggctttgatactttttttgtaacaagccaagatccttacgaggtgtgtgcctatct |
35354434 |
T |
|
| Q |
201 |
ttcctctatttagttttgcatatgcacaaaggtcttgttgcatgaagattgggtcctgatttttctgctagggtggagtgctattcaagggaaacctgcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354435 |
ttcctctatttagttttgcatatgcacaaaggtcttgttgcatgaagattgggtcccgatttttctgctagggtggagtgctattcaagggaaacctgcg |
35354534 |
T |
|
| Q |
301 |
agggcaagcttctaaaagttatgataagatatcaaagagattgcaagtatgccatatttctgtttcat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354535 |
agggcaagcttctaaaagttatgataagatatcaaagagattgcaagtatgccatatttctgtttcat |
35354602 |
T |
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