View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_high_12 (Length: 377)
Name: NF11123_high_12
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 7113978 - 7114350
Alignment:
| Q |
1 |
ctgagataccacaccctcttacacaaagctggacaatagccgagagcacacctctctgaattgagttgtcatttgttggaatacgattacgaagtagcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7113978 |
ctgagataccacaccctcttacacaaagctggacaatagccgtgagcacacctctctgaattaagttgtcatttgttggaatacgattacgaagtagcct |
7114077 |
T |
|
| Q |
101 |
ccacacaaagagacaaacttttggaggacatttttatgtcaaatgagatgagaattgacgtctatgatttgttgatccactaaaattaaaaagttgtaat |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||| |
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| T |
7114078 |
ccacacaaagagacaaactttcggaggacatttttatgtcaaatgagatgagaattgacgtttatgatttgttgatccactaaaaatagaaagttgcaat |
7114177 |
T |
|
| Q |
201 |
tatacnnnnnnnnnnnngaagtatgcaaagacatagccaattgtcattcacatcttcctgcaaaacaatagaattcaacaaggaacaatact-------- |
292 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
7114178 |
tatac----ttttttttgaagtatgcaaagacatagccaattgtcattcacatcttcttgcaaaacaatataattcaacaaggaacaatagtctcctaac |
7114273 |
T |
|
| Q |
293 |
--atcctcctccaaagcccacaaccttctccgccatctccaagtctcaccaccctcacccaaacataactgattcat |
367 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7114274 |
tgatcctccttcaaagcccacaaccttctccgccatcttcaagtctcaccaccctcacccaaacataactgattcat |
7114350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 32377573 - 32377463
Alignment:
| Q |
11 |
acaccctcttacacaaagctggacaatagccgagagcacacctctctgaattgagttgtcatttgttggaatacgattacgaagtagcctccacacaaag |
110 |
Q |
| |
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|||| ||| ||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
32377573 |
acactctcctacacaaagctggttaatagccatgagcacacctcgccaaattaagttgtcatttgttggaataagattacatagaagcctccacacaaag |
32377474 |
T |
|
| Q |
111 |
agacaaacttt |
121 |
Q |
| |
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||||||||||| |
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| T |
32377473 |
agacaaacttt |
32377463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 4263829 - 4263978
Alignment:
| Q |
47 |
cacacctctctgaattgagttgtcatttgttggaatacgattacgaagtagcctccacacaaagagacaaacttttggagg-acatttttatgtcaaatg |
145 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||| ||||||||||| ||||| |||||| | ||||||| ||||| ||| || | ||||| |||||| |
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| T |
4263829 |
cacacctctccgaattaagttgtcatttattgaaatacgattacaaagtaacctccatgtagagagacagactttcaaagggacctctttataccaaatg |
4263928 |
T |
|
| Q |
146 |
agatgagaattgacgtctatgatttgttgatccactaaaattaaaaagtt |
195 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||| || |||||||||| |
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|
| T |
4263929 |
agatgagaattgatgtctatgatgtgttgatccactgaatttaaaaagtt |
4263978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 4315670 - 4315532
Alignment:
| Q |
56 |
ctgaattgagttgtcatttgttggaatacgattacgaagtagcctccacacaaagagacaaacttttggaggacatttttatgtcaaatgagatgagaat |
155 |
Q |
| |
|
||||||| ||||||||||| ||||||||| | | ||||| |||||||||| | ||||||||||| | || | |||||| ||||||| |||||||| |
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| T |
4315670 |
ctgaattaagttgtcatttattggaatacaa---ccaagtaacctccacacacatagacaaactttaaaggaacctctttatgccaaatgaaatgagaat |
4315574 |
T |
|
| Q |
156 |
tgacgtctatgatttgttgatccactaaaattaaaaagttgt |
197 |
Q |
| |
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||| ||||||||| |||||||||||| ||||||||| ||||| |
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| T |
4315573 |
tgatgtctatgatgtgttgatccactgaaattaaaacgttgt |
4315532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 4264021 - 4264139
Alignment:
| Q |
244 |
tcattcacatcttcctgcaaaacaatagaattcaacaaggaacaatact----------atcctcctccaaagcccacaaccttctccgccatctccaag |
333 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | || ||||||||||| |
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|
| T |
4264021 |
tcattcaaatcctcgtgcaaaacaatagaattcaacaaggaacaatactctcctaattggtcctcctctcaagcccacaacctcccccaccatctccaag |
4264120 |
T |
|
| Q |
334 |
tctcaccaccctcacccaa |
352 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
4264121 |
cctcaccaccctcacccaa |
4264139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 4315422 - 4315377
Alignment:
| Q |
322 |
gccatctccaagtctcaccaccctcacccaaacataactgattcat |
367 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
4315422 |
gccatctccaaacatcaccaccctcacccaaacctaactgattcat |
4315377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 4315476 - 4315444
Alignment:
| Q |
259 |
tgcaaaacaatagaattcaacaaggaacaatac |
291 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
4315476 |
tgcaaaacaatataattcaacaaggaacaatac |
4315444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 17212839 - 17212880
Alignment:
| Q |
240 |
attgtcattcacatcttcctgcaaaacaatagaattcaacaa |
281 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
17212839 |
attgtcattcacatcctcctgcaaaacaatataattcaacaa |
17212880 |
T |
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