View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_high_13 (Length: 369)
Name: NF11123_high_13
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 3994321 - 3994667
Alignment:
| Q |
11 |
caaaggcaaaagatagaatt-ttaataaaa-atgctagtgctagcaaagttgatggaaggtagaaagtcacctctctagttcatgaagccaactgtcagt |
108 |
Q |
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| T |
3994321 |
caaaggcaaaagatagaattcttaataaaaaatgctagtgctagcaaagttgatggtaggtagaaagtcacctctctagttcatgaagccaactgtcagt |
3994420 |
T |
|
| Q |
109 |
gttggcttacatgtgttataaatgtaaaaattcctatgtagcactcaagaatcaacacctcttaaatatttgaccaataatgatcatctctatttgtnnn |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3994421 |
gttggcttacatgtgttataaatgtaaaaattcctatgtagcactcaagaatcaacacctgttaaatatttgaccaataatgatcatctctatttgtaaa |
3994520 |
T |
|
| Q |
209 |
nnnnnnnnnnnnnnnnttgactcagatgatttttgtagaatga--tcattgcaaaatattgttagtattatgctagaaatgaatatcgagctctcaactt |
306 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3994521 |
aaacaaaaattaaaaattgactcagatgatttttgtagaatgatctcattgtaaaatattgttagtattatgctagaaatgaatatcgagctctcaactt |
3994620 |
T |
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| Q |
307 |
ctttttatcacttcactccttatccctctcaacctagcaacaaaacc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3994621 |
ctttttatcacttcactccttatccctctcaacctagcaacaaaacc |
3994667 |
T |
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