View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_high_14 (Length: 368)
Name: NF11123_high_14
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 22233016 - 22233355
Alignment:
| Q |
13 |
gaacttgtcactgattgtttgtttgtttatttatctttatacataaacttatgttgtctagggtaggaccttaaatccttaattactcaccccacaatca |
112 |
Q |
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| T |
22233016 |
gaacttgtcactgattgtttgtttgtttatttatctttatacataaacttatgttgtctagggtaggaccttaaatccttaatcactcaccccacaatca |
22233115 |
T |
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| Q |
113 |
tgatgaaagaaattatcaacaaagaaataccaatactatttttaattaaagtgacattaatgattatttcacccattca-ttgttataagaagaagaagn |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
22233116 |
tgatgaaagaaattatcaacaaagaaataccaatactatttttaattaaagtgacattaatgattattccacccggtcacttgttataagaagaagaa-a |
22233214 |
T |
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| Q |
212 |
nnnnnnccttaaatttcggtaactatatatacaaaagt----tatttttcaactatttagtgttagtattcttaatatataatttaattcaaaaacattt |
307 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22233215 |
aaaaaaacttaaatttcggtaactatatatacaaaagttaactatttttcaactatttagtgttagtattcttaatatataatttaattcaaaaaaattt |
22233314 |
T |
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| Q |
308 |
aatgtaggtaattgagtgatcattcaataccaacaaggatg |
348 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
22233315 |
aatgcaggtaattgagtgatcattcaataccaacaaggatg |
22233355 |
T |
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