View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_high_16 (Length: 359)
Name: NF11123_high_16
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 48819238 - 48818905
Alignment:
| Q |
18 |
gtttcatatacatatggttcattcatacttggttctgtcctttgtacccttaataattttgcccaaagaaaattttacaaattctgctaattttacagta |
117 |
Q |
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| T |
48819238 |
gtttcatatacatatggttcatgcatacttggttctgtcctttgtacccttaataattttgcccaaagaaaattttacaaattgtgctaattttacagta |
48819139 |
T |
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| Q |
118 |
atgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcgtccatgttatattggcatag |
217 |
Q |
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| T |
48819138 |
atgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcatccatgttatattggcatag |
48819039 |
T |
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| Q |
218 |
gtcaagtcaactactattgtcgtcatgcagctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatg |
317 |
Q |
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| T |
48819038 |
gtcaagtcaactactattgtcgtcatgccgctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatg |
48818939 |
T |
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| Q |
318 |
tccggggaacacacctcctgctgctgcctttgct |
351 |
Q |
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| T |
48818938 |
tccggggaacacacctcctgctgctgcctttgct |
48818905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 104 - 338
Target Start/End: Complemental strand, 16004984 - 16004750
Alignment:
| Q |
104 |
ctaattttacagtaatgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcgtccatg |
203 |
Q |
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| T |
16004984 |
ctaattttacagtaatgtcggaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttccatg |
16004885 |
T |
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| Q |
204 |
ttatattggcataggtcaagtcaactactattgtcgtcatgcagctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgt |
303 |
Q |
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|||| ||||||||||| || || ||||||||||||||||| | | | ||||||| |||||||||||||||||||| | ||||||||| |||||||| ||| |
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| T |
16004884 |
ttatgttggcataggtgaaatccactactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgt |
16004785 |
T |
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| Q |
304 |
caagttcgtggatgtccggggaacacacctcctgc |
338 |
Q |
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| T |
16004784 |
caagtgcgcgggtgccctgggaacacacctcctgc |
16004750 |
T |
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