View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11123_high_20 (Length: 342)
Name: NF11123_high_20
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 23233249 - 23233566
Alignment:
| Q |
19 |
ttaaagggacaaccataatatatcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23233249 |
ttaaagggacaaacataatatatcaatgtactttcgaaacatttagaaattgttctaattttaataaaggaattcttgcaacaacattattattaataat |
23233348 |
T |
|
| Q |
119 |
tatttaattgacataaacatatcatgaggtattttactatatacagtaataaaggagttcatattttttacacacaaagat-aaaaaatggctgaaatgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23233349 |
tatttaattgacataaacatatcatgaggtattttactatataaagtaataaaggagttcatattttttacacacaaagataaaaaaatggctgaaatgt |
23233448 |
T |
|
| Q |
218 |
tcaagnnnnnnnatactatgatcattttagtttccctatttcttgttgtatccttttctaatggtaagctcgttcaannnnnnncttttgttaatcttaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
23233449 |
tcaagtttttttatactatgatcattttagtttccctatttcttgttgtatccttttctaatggtaagttcgttcaatttttttcttttgttaatcttaa |
23233548 |
T |
|
| Q |
318 |
aggaaatctttcatctca |
335 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
23233549 |
aggaaatctttcatctca |
23233566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 23238648 - 23238917
Alignment:
| Q |
19 |
ttaaagggacaaccataatatatcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataat |
118 |
Q |
| |
|
|||||||||||| ||| |||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||| | | |
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|
| T |
23238648 |
ttaaagggacaaacatgatatattgatgcactttcgatacatttagcaattgttctaattttaatgaaggaattcttgcaataaccttatgattaaaact |
23238747 |
T |
|
| Q |
119 |
tatttaattgacataaacatatcatgaggtattttactatatacagtaataaaggagttcatattttttacacacaaagataaaaaatggctgaaatgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||| |||| ||||||| | |||||||||||||||||| |
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|
| T |
23238748 |
tatttaattgacataaacatatcatgaggtattttactatataatgtgataaatgagtttatatttgttacgcacaaaggtgaaaaatggctgaaatgtt |
23238847 |
T |
|
| Q |
219 |
caagnnnnnnnatactatgatcattttagtttccctatttcttgttgtatccttttctaatggtaagctc |
288 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||||| ||||||| || ||||||||| |
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|
| T |
23238848 |
caagattttttatattatgatcatttttgtttccctatttcttgttgtaaccttttccaagggtaagctc |
23238917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 264
Target Start/End: Complemental strand, 23123297 - 23123081
Alignment:
| Q |
42 |
caatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataattatttaattgacataaacatatc |
141 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||| |||||||||| |
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|
| T |
23123297 |
caatgtactttcaaaatatttagcaattgttctaattttaatgaaagaattcttgc---aacattattaataaaaattatttaattgacgtaaacatatc |
23123201 |
T |
|
| Q |
142 |
atgaggtattttactatatacagtaataaaggagttcatattttttacacacaaagataaaaaatggctgaaatgttcaagnnnnnnnatactatgatca |
241 |
Q |
| |
|
| | || ||||||||| || ||| |||||| | || ||| || || |||||||| | || |||||||||||| |||||| ||||||| ||| |
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|
| T |
23123200 |
acta-gttttttactatttaaagtgataaagaaatttatacttgtt--acacaaaggtgaataatggctgaaattttcaagttcttttatactatagtca |
23123104 |
T |
|
| Q |
242 |
ttttagtttccctatttcttgtt |
264 |
Q |
| |
|
|| | |||||||||||| ||||| |
|
|
| T |
23123103 |
ttcttgtttccctattttttgtt |
23123081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 23123849 - 23123698
Alignment:
| Q |
20 |
taaagggacaaccataatatatcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataatt |
119 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| || ||| || |||| |||||||| | |||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
23123849 |
taaagggacaaacatgatatttcaatgtactttcaaatcatctaacaatttttctaattacagtgaaggaattattggaacaacataattattaaaaatt |
23123750 |
T |
|
| Q |
120 |
atttaattgacataaacatatcatgaggtattttactatatacagtaataaa |
171 |
Q |
| |
|
||||||||||| | | ||||||||||| | ||| ||| |||| ||| ||||| |
|
|
| T |
23123749 |
atttaattgacgtgagcatatcatgagatttttcactctataaagtgataaa |
23123698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 23653821 - 23653938
Alignment:
| Q |
40 |
atcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataattatttaattgacataaacata |
139 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| |||||||||||| || | |||||||||||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
23653821 |
atcaatgttctttagagacatttaaaaattattctaattttaa---agtatatcttgcaacaacataataattaaaaattatttaattgatataaacata |
23653917 |
T |
|
| Q |
140 |
tcatgaggtattttactatat |
160 |
Q |
| |
|
|| || || |||||||||| |
|
|
| T |
23653918 |
acaagatataatttactatat |
23653938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 23659596 - 23659713
Alignment:
| Q |
40 |
atcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataattatttaattgacataaacata |
139 |
Q |
| |
|
||||||||||||| | ||||||| ||||| |||||| |||| ||||| ||||||||||||||| |||| | || ||||||||||| |||||||| |
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|
| T |
23659596 |
atcaatgtactttagggacatttaaaaattattctaacttta---aaggatttcttgcaacaacataattaaaataaactatttaattgatgtaaacata |
23659692 |
T |
|
| Q |
140 |
tcatgaggtattttactatat |
160 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
23659693 |
acaagaggatttttactatat |
23659713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 24301781 - 24301883
Alignment:
| Q |
66 |
aattgttctaattttaatgaaggaattcttgcaacaacat--tattattaataattatttaattgacataaacatatcatgaggtattttactatataca |
163 |
Q |
| |
|
|||| ||||||||||||||| || |||||| | |||||| ||||||||| ||| ||||||||||||||||| | |||||| | ||| |||||||| | |
|
|
| T |
24301781 |
aattattctaattttaatgattgatttcttgtagcaacatactattattaaaaat-atttaattgacataaaccttgcatgagatttttcactatataaa |
24301879 |
T |
|
| Q |
164 |
gtaa |
167 |
Q |
| |
|
|||| |
|
|
| T |
24301880 |
gtaa |
24301883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 8443193 - 8443285
Alignment:
| Q |
68 |
ttgttctaattttaatgaaggaattcttgcaacaacattattattaataattatttaattgacataaacatatcatgaggtattttactatata |
161 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||||||||| | |||||||||||||||| || ||||||||| | ||||||||||||| |
|
|
| T |
8443193 |
ttgttctaattttattaaagaaataattgcaacaacattattattgaaaattatttaattgacaaaactatatcatgatg-attttactatata |
8443285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 8443688 - 8443764
Alignment:
| Q |
20 |
taaagggacaaccataatatatcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttg |
96 |
Q |
| |
|
||||||||||| ||| || |||||||| ||||| ||| | |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8443688 |
taaagggacaaacatgctacatcaatgtgctttcaaaatacttagcaattgttttaattttaatgaaggaattcttg |
8443764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 13824915 - 13825056
Alignment:
| Q |
20 |
taaagggacaaccataatatatcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattattaataatt |
119 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| || | |||| |||| | |||||||||||||| | ||||||||| |||| ||||||| ||| | |
|
|
| T |
13824915 |
taaagggacaaacataatacatcaatccactttagataagtttaataattaatttaattttaatgaagaatttcttgcaataacaaaattattattaaat |
13825014 |
T |
|
| Q |
120 |
atttaattgacataaacatatcatgaggtattttactatata |
161 |
Q |
| |
|
|||| |||||| ||||||| ||||| | |||||||||||| |
|
|
| T |
13825015 |
attttattgacgtaaacattgcatgatcttttttactatata |
13825056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 20503416 - 20503538
Alignment:
| Q |
41 |
tcaatgtactttcgaaacatttagaaattgttctaattttaatgaaggaattcttgcaacaacattattatt--aataattatttaattgacataaacat |
138 |
Q |
| |
|
||||| |||||| || |||||| |||| ||||||||||||||||||| || ||| ||| |||| |||||| || ||| ||||||||||||||| || |
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|
| T |
20503416 |
tcaatatactttagagccatttaataatttttctaattttaatgaaggatttattgaaactacataattattaaaaaaatattttaattgacataaaaat |
20503515 |
T |
|
| Q |
139 |
atcatgaggtattttactatata |
161 |
Q |
| |
|
| |||| ||| || ||||||||| |
|
|
| T |
20503516 |
agcatgtggttttctactatata |
20503538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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