View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11123_high_28 (Length: 287)

Name: NF11123_high_28
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11123_high_28
NF11123_high_28
[»] chr4 (11 HSPs)
chr4 (115-287)||(3957700-3957872)
chr4 (13-117)||(3959176-3959280)
chr4 (121-222)||(4022830-4022931)
chr4 (121-283)||(4007672-4007834)
chr4 (120-220)||(3984753-3984853)
chr4 (120-223)||(3999874-3999977)
chr4 (126-220)||(3815439-3815533)
chr4 (115-222)||(3922309-3922416)
chr4 (124-222)||(3935669-3935767)
chr4 (121-222)||(3998681-3998782)
chr4 (124-166)||(3807848-3807890)
[»] chr8 (1 HSPs)
chr8 (13-117)||(19167917-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (62-117)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 3957872 - 3957700
Alignment:
Q  115 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcataca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3957872 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgtgaacatggtgggtcgtatatcatgcataca 3957773  T
Q  215 tgatctgaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatccacaa 287  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957772 tgatctgaaaaactagagaaaaaatacctatacatgaagatactgacaccatccttttcttcatcatccacaa 3957700  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 3959280 - 3959176
Alignment:
Q  13 cacagatggacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959280 cacagatggacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactca 3959181  T
Q  113 atggg 117  Q
    |||||    
T  3959180 atggg 3959176  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 4022830 - 4022931
Alignment:
Q  121 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 220  Q
    ||||||||| ||||||||||||||||||||| |||  || ||||||||||||||||||||| | ||| ||||| |||||||||||||||| |||||||||    
T  4022830 tgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtagtgagaaaatggttggtcgtatatcatgcacacatgatct 4022929  T
Q  221 ga 222  Q
    ||    
T  4022930 ga 4022931  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 283
Target Start/End: Original strand, 4007672 - 4007834
Alignment:
Q  121 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 220  Q
    ||||||||||||||||||||||||||||||||| || || |||||||  ||||||||||| || |||||| || |||||| ||||||||| |||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggtaccgagaacatcgttggtcgtgtatcatgcacacatgatct 4007771  T
Q  221 gaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatcc 283  Q
    ||   | ||  || |   | ||||| |||| | |||||||||||||||||||| |||||||||    
T  4007772 gatgcaataccgagaggtgtcctattcatgtaaatactgacaccatccttttcatcatcatcc 4007834  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 3984753 - 3984853
Alignment:
Q  120 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatc 219  Q
    ||||||||||||||||||||||||||| |  ||||||  |||| |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  3984753 ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtagtgagaacatggttggtcgtatatcatgcacacatgatc 3984852  T
Q  220 t 220  Q
    |    
T  3984853 t 3984853  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 3999874 - 3999977
Alignment:
Q  120 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatc 219  Q
    |||||||||||| |||||||||||| |||||||| || ||||| ||||| |||||||||||  | ||| ||||||||||||||||||| || ||||||||    
T  3999874 ttgtccttgctgcaaccttgattttgaaccttgtatgatttttcgctattctagttaggtactgagaaaatggtgggtcgtatatcatacacacatgatc 3999973  T
Q  220 tgaa 223  Q
    ||||    
T  3999974 tgaa 3999977  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 3815439 - 3815533
Alignment:
Q  126 ttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 220  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |  |||||| || |||| | |||||||||||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtacccagaacatcgttggtcctgtatcatgcatacatgatct 3815533  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 3922416 - 3922309
Alignment:
Q  115 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcataca 214  Q
    |||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||   | ||||| ||| ||||||| ||||| || |||    
T  3922416 gggtattgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtgctgagaacaaggttggtcgtaaatcatacacaca 3922317  T
Q  215 tgatctga 222  Q
    ||||||||    
T  3922316 tgatctga 3922309  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 3935767 - 3935669
Alignment:
Q  124 ccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatctga 222  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||  | || || ||| ||||||| ||||| || |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtactgagagcaaggttggtcgtaaatcatacacacatgatctga 3935669  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 3998681 - 3998782
Alignment:
Q  121 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 220  Q
    |||||||||||||||||| |||||||||||||| || || |||||||  ||||||||||| || |||||| || ||| || ||||||||| |||||||||    
T  3998681 tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggtaccgagaacattgttggttgtgtatcatgcacacatgatct 3998780  T
Q  221 ga 222  Q
    ||    
T  3998781 ga 3998782  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 3807848 - 3807890
Alignment:
Q  124 ccttgctgtaaccttgattttaaaccttgtctgcttttttgct 166  Q
    |||| |||||||||||||||||||||||| ||| |||||||||    
T  3807848 ccttactgtaaccttgattttaaaccttgcctgattttttgct 3807890  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 19167917 - 19168021
Alignment:
Q  13 cacagatggacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactca 112  Q
    ||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19167917 cacagattgacacggctattgcccatgttgctagatatgaagatcaggtaaacaatcctagtactgctgcaatgaagagtgttagcatattaagaactca 19168016  T
Q  113 atggg 117  Q
    |||||    
T  19168017 atggg 19168021  T

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Target: scaffold0060 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 18706 - 18761
Alignment:
Q  62 aaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 117  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  18706 aaacaatcctagtactgcttcaatgaagagtgtaagcatattaagaactcaatggg 18761  T

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