View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_1 (Length: 723)
Name: NF11123_low_1
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 19 - 723
Target Start/End: Complemental strand, 43031191 - 43030485
Alignment:
| Q |
19 |
ggtgcgaggaatttttacactcctagttcgcttccttttacacacagagttcaatatactattgattgaggatgttgagggtattggtactgcaag---- |
114 |
Q |
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| T |
43031191 |
ggtgcgaggaatttttacactgctagttcgcttccttttacacacacagttcaatatactattgattgaggatgttgagggtattggtactgcaagcaag |
43031092 |
T |
|
| Q |
115 |
gtgattgattgttcaaaaaactaccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagaga |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43031091 |
gtgattgattgttcaaaaaaataccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagaga |
43030992 |
T |
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| Q |
215 |
atttgaagttgcaatcgagnnnnnnnngcatggatcagttacatgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattga |
314 |
Q |
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| T |
43030991 |
atttgaagttgcaatcgagttttttttgcatggatcagttaca--agcttctcagtggaaaaaaagtggaaactccccaagaagctatcaatgccattga |
43030894 |
T |
|
| Q |
315 |
cattgtattgaaagagcttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatattattgtttcttacaccttaatttgcatct |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43030893 |
cattttattgaaagagcttgcatctcataggtgaatttctgcctggtctttcaaattttatcatatcatattattgtttcttacaccttaatttgcatct |
43030794 |
T |
|
| Q |
415 |
ttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttggaatcatggtgcggtttcttgcaaag |
514 |
Q |
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| T |
43030793 |
ttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttggaatcatggtgcggtttcttgcaaag |
43030694 |
T |
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| Q |
515 |
tataaggcctactcagatgggattgccacatgatgttggtgagaattctaccataccttcatctttttctaatgagatttttgtctcagccctcctctta |
614 |
Q |
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| T |
43030693 |
tataaggcctactcagatgggattgtcacatgatgttggtgagaattctaccatatcttcatctttttctaatgagatttttgtctcggccctcctctta |
43030594 |
T |
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| Q |
615 |
ttgggggagaagggctttgataatccaaagttaggccgataagtaaaatctaaccaataattgtttcaatcaagtttcgaattaggattctcccaaacaa |
714 |
Q |
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| T |
43030593 |
ttgggggagaagggctttgataatccaaagttaggccgataagtaaagtctaaccaataattgtttcagtcaagtttcgaattagaattctcccaaacaa |
43030494 |
T |
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| Q |
715 |
tttgtcttt |
723 |
Q |
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||||||||| |
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| T |
43030493 |
tttgtcttt |
43030485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 588
Target Start/End: Original strand, 46527217 - 46527788
Alignment:
| Q |
27 |
gaatttttacactcctagttcgcttccttttacacaca--gagttcaatatactattgattgaggatgttgagggtattggtactgcaaggtgattgatt |
124 |
Q |
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|||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
46527217 |
gaatctttacactgccggttcgcttccttttacacacaaagagttcaatatactattgattgaggatgatgagggttttggtactacaaggtgattgatt |
46527316 |
T |
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| Q |
125 |
g-ttcaaaaaactaccatgtaaattttctttaaacttttggattttgtaacaaatatga-gttgtaaatttgtgtgttttaggggaaagagaatttgaag |
222 |
Q |
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| T |
46527317 |
tattcaagaaaaaaccatgtaaattttctttaaatttttggattttgtaacaaatatgaagttgtaaatttgtgtgttca--gggaaagaaaatttgaag |
46527414 |
T |
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| Q |
223 |
ttgcaatcgagnnnnnnnngcatgg--------atcagttacatgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattga |
314 |
Q |
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| T |
46527415 |
ttgcaatcaagtttttagctcatgttagtatgcatcagttacatgagcttctcagtggaaaaaaagtggaaactccacaagaagctatcaatgccattga |
46527514 |
T |
|
| Q |
315 |
cattgtattgaaagagcttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatattattgtttcttacaccttaatttgcatct |
414 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| || | |
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| T |
46527515 |
cattgtattgaaggagcttgcatctcataggtgaatttgagctttgtctttcaagttttaacatatcatgttattgtttctgacaccttaatttgtatat |
46527614 |
T |
|
| Q |
415 |
ttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttggaatcatggtgcggtttcttgcaaag |
514 |
Q |
| |
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||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
46527615 |
ttagctatgtatcatttgggagcttacactattctccggatttaaaaaaaccacataagctgagtggtggcttggaatcatggagcggtttctatcaaag |
46527714 |
T |
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| Q |
515 |
tataaggcctactcagatgggattgccacatgatgttggtgagaattctaccataccttcatctttttctaatg |
588 |
Q |
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|||||||||||||||||||||||| | | | |||||||||||| |||||||||| |||||| ||||| ||||| |
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| T |
46527715 |
tataaggcctactcagatgggattatcgcttaatgttggtgagacttctaccatatcttcatatttttttaatg |
46527788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 713
Target Start/End: Original strand, 46527797 - 46527881
Alignment:
| Q |
629 |
ctttgataatccaaagttaggccgataagtaaaatctaaccaataattgtttcaatcaagtttcgaattaggattctcccaaaca |
713 |
Q |
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|||| ||||||||||||| || ||||||||||| ||||||| ||||||||||| | | |||||||| || | ||||||| |||| |
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| T |
46527797 |
ctttaataatccaaagttcggacgataagtaaagtctaaccgttaattgtttcagttaggtttcgaagtatggttctcccgaaca |
46527881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 692
Target Start/End: Complemental strand, 638339 - 638301
Alignment:
| Q |
654 |
taagtaaaatctaaccaataattgtttcaatcaagtttc |
692 |
Q |
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|||||||||| |||||||||||||||||||||| ||||| |
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| T |
638339 |
taagtaaaatttaaccaataattgtttcaatcaggtttc |
638301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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