View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_15 (Length: 367)
Name: NF11123_low_15
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 9498462 - 9498805
Alignment:
| Q |
16 |
tctctttccttatacacctttcttgtaattactttatgtatcttgatcggtaagctattatatagaaatacattgcactcgtgagccaaaataaagatga |
115 |
Q |
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| T |
9498462 |
tctctttccttatacacctttcttgtaattactttatgtatcttgatcagtaagttattttatagaaatacagtgcactcgtgagccaaaataaagatga |
9498561 |
T |
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| Q |
116 |
aagcaaataacaaatgaatatgannnnnnnaacctctcgttctta-gaaaaagggcatagtaatccgtaattcgattgaaaggtaattaaatgaattaag |
214 |
Q |
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| T |
9498562 |
aagcaaataacaaatgaatatgatttttttaacttctcgttcttaggaaaaggggcatagtaattcgtaattcgattgaaaggtaattaaatgaattaag |
9498661 |
T |
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| Q |
215 |
atgaaatgatagttgtatttatatttgcaatttaaacaacaaaaatttacaattacaaagactaaatttgtgattcactccgaaaaaagaagaagctagg |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
9498662 |
atgaaatgatagttttatttatatttgcaatttaaacaacaaaaatttacaattacaaagac-aaatttgtgattcactccaaaaaaagaagaagctagg |
9498760 |
T |
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| Q |
315 |
ctttatctttattttaaatctttgctttgagacctattcttctgt |
359 |
Q |
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| T |
9498761 |
ctttatctttattttaaatctttgctttaagacctattcttctgt |
9498805 |
T |
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