View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_17 (Length: 359)
Name: NF11123_low_17
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 11256468 - 11256118
Alignment:
| Q |
30 |
tttctaccacgtactcatagtttcaacagtcagaaatcaaaatcaacagaatgaataattaagcagaatttgaaagcgaataattgaaaaaagaagagat |
129 |
Q |
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| T |
11256468 |
tttctaccacgtactcatagtttcaacactcagaaatcaaaatcaacagaatgaataattaagcagaatttgaaagcgaataattgaaaaaagaagagat |
11256369 |
T |
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| Q |
130 |
agg-------gttagaacgtactttgggattgttggagtttgagggtgagagagtggttgttgagatagagatgatgggtaaagaaggaaatgaagttga |
222 |
Q |
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| T |
11256368 |
aggagagtgggttagaacgtactttgggattgttggagtttgagggtgagagagtggttgttgagatagagatgatgggtaaagaaggaaatgaacttga |
11256269 |
T |
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| Q |
223 |
aaatgaaagcgacgatggagacgaagaaggttgaagttttagttggcgaagcttattatcgcaacagagcgatgct------------------gatgat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
11256268 |
aaatgaaagcgacgatggagacgaagaaggttgaagttttagttgccgaagcttattatcgcaacagagcgatgctgatgctgatgctgaaggtgatgat |
11256169 |
T |
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| Q |
305 |
gcccaaccaacacaactcgttatcatttccacttctttcttctctgctcct |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11256168 |
gcccaaccaacacaactcgttatcatttccacttctttcttccctgctcct |
11256118 |
T |
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