View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_18 (Length: 354)
Name: NF11123_low_18
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 9864866 - 9864542
Alignment:
| Q |
20 |
tgactttccgattttgagctgtgttagtaaacgcgtcaacacaggcgaacctgtactagctagtagaagggaaagagctgttgtgaattctaatatttta |
119 |
Q |
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| T |
9864866 |
tgactttccgattttgagctgtgttagtaaacgcgtcaacacaggcgaacctgtactagctagtagaagggaaagagctgttgtgaattctaatatttta |
9864767 |
T |
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| Q |
120 |
tctctgtttgggaagtaagttacaaaaggggagaaaataattcctagtaagattgttatgcaaattcctggataagcaactctaacatgtcttggtggnn |
219 |
Q |
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| T |
9864766 |
tctctgtttgggaagtaagttacaaaaggggagaaaataattcctagtaagattgttatgcaaattcctggataagcaactctaacatgtcttggtggtt |
9864667 |
T |
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| Q |
220 |
nnnnnaatagtatataagggtccatttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgtcctgttgaatttctc |
319 |
Q |
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| T |
9864666 |
tttttaatagtatataagggtccatttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgtcctgttgaatttctc |
9864567 |
T |
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| Q |
320 |
aaatagattgcgtacaattcctatg |
344 |
Q |
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| T |
9864566 |
aaatagattgcgtacaattcctatg |
9864542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 13954834 - 13954910
Alignment:
| Q |
228 |
agtatataagggtccatttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgt |
304 |
Q |
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| T |
13954834 |
agtacataaggatccatttctacacccaaagcaaacatgtaacacatcattccaaaatcaatgataaatccaaatgt |
13954910 |
T |
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