View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11123_low_2 (Length: 612)
Name: NF11123_low_2
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 324 - 601
Target Start/End: Complemental strand, 41330721 - 41330445
Alignment:
| Q |
324 |
cacattcatgccttcaacctagaaaaaagtaaacacagcaaactgcatttcacttctgaattgcggcatagaaacatgaaaaagtcgatgaaagccgatc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41330721 |
cacattcatgccttcaacctagaaaaaagtaaacacagcaaactgcatttcacttctgaattgcggcatagaaacatgaaaaagtcgatgaaagccgatc |
41330622 |
T |
|
| Q |
424 |
ccagaatatttgtttcgacgtttctcgttccagcttagaaaatgatatcctcacccttgtctatcacttaaaaaacaagtggtagatgtcctgattaaaa |
523 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41330621 |
ccagaacatttgtttcgacgtttctcgttccggcttggaaaatgatatcctcacccttgtctatcacttaaaaaacaagtggtagatgtcctgattaaaa |
41330522 |
T |
|
| Q |
524 |
gtcgcctctttgatttctcctcgtagtactcaagatcctcaacatctatccctatctccttaccatctccttcatctc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
41330521 |
gtcgcctctttgatttctcctcgtagtactcaagatcctcaacatctatccctatctcctt-ccacctccttcatctc |
41330445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 41331027 - 41330768
Alignment:
| Q |
20 |
cttttgtttgcctatgttttgtaaaggtttaattacgcatgtaattccaaacaaaaatggattaatttgattttagt-actgtaatnnnnnnntcttgca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41331027 |
cttttgtttgcctatgttttgtaaaggtttaattacgcatgtaattccaaacaaaaatggattaatttgattttagttactgtaataaaaaaatcttgca |
41330928 |
T |
|
| Q |
119 |
attgtcactttcttgttctaaagagtct-aacgaaatatcaaatgttaatcatttacgatttgagttgcacccatgttagaattttttcatttaaaaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41330927 |
attgtcactttcttgttctaaagagtcttaacgaaatatcaaatgttaatcatttacgatttgagttgcacccatgttagaattttttcatttaaaaaag |
41330828 |
T |
|
| Q |
218 |
ttgaagtggcaaattttagagacgtggtatgtgaagcgacatactttatgctatgaggat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41330827 |
ttgaagtggcaaattttagagacgtggtatgtgaagcgacatactttatgctatgaggat |
41330768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University