View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11123_low_21 (Length: 317)

Name: NF11123_low_21
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11123_low_21
NF11123_low_21
[»] chr8 (1 HSPs)
chr8 (4-298)||(30154795-30155091)
[»] chr7 (3 HSPs)
chr7 (59-156)||(20954924-20955021)
chr7 (61-148)||(36423092-36423180)
chr7 (107-148)||(46142968-46143009)
[»] chr2 (3 HSPs)
chr2 (89-147)||(12294767-12294825)
chr2 (69-148)||(3271546-3271625)
chr2 (58-133)||(11789258-11789333)
[»] chr1 (2 HSPs)
chr1 (108-149)||(42883918-42883959)
chr1 (78-139)||(35634580-35634641)
[»] chr6 (1 HSPs)
chr6 (90-159)||(6455708-6455777)
[»] chr3 (2 HSPs)
chr3 (65-145)||(2907890-2907970)
chr3 (107-159)||(45985088-45985140)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 30155091 - 30154795
Alignment:
Q  4 ggaggagcagagagaaaaaagtgtgggaaaatgaatgtgaagaaatgttggattaatagagtgtttggatctgcgtttaaagcttgattctcacgtccct 103  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||    
T  30155091 ggaggagttgagagaaaaaagtgtgggaaaatgaatgtgaagaaatgttggattaatagagtgtttggatatgcgtttaaagcttgattctcgcatccct 30154992  T
Q  104 gaacaattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaacgtccg--nnnnnnnggtttccacagcttcaactaacacatgctaag 201  Q
     ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||         ||||||||| |||||||| |||||||||||||    
T  30154991 aaacaattttaccgtgaaaataaagaagctacaaaatgtagcatcggtacaaacgtacgtttttttttggtttccacggcttcaacaaacacatgctaag 30154892  T
Q  202 tttaacnnnnnnnnnnnnaaaataactaaatcataaagtccatacattcataatttagtcccatcaacaaattaaaaggaaaaaatagagagcacct 298  Q
    ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30154891 tttaacttttttatttttaaaataactaaatcataaagtccatacattcataatttagtcccatcaacaaattaaaaggaaaaaatagagagcacct 30154795  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 20955021 - 20954924
Alignment:
Q  59 atagagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaa 156  Q
    |||||||||| |||| |||||||||||||||| ||||  ||||||   || |||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  20955021 atagagtgttcggatatgcgtttaaagcttgaatctcgggtccctaggcagttttaccgtggaaataaagaagctacaaaatgtagcatcggtgcaaa 20954924  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 36423180 - 36423092
Alignment:
Q  61 agagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaa-ttttgccgtgaaaataaagaagctacaaaatgtagcatc 148  Q
    ||||||||||||||||||| |||||||||||||||| ||||||  |||| ||||  ||| |||||||||||| ||||||||||||||||    
T  36423180 agagtgtttggatctgcgtataaagcttgattctcatgtccctagacaatttttttcgtaaaaataaagaaggtacaaaatgtagcatc 36423092  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 46143009 - 46142968
Alignment:
Q  107 caattttgccgtgaaaataaagaagctacaaaatgtagcatc 148  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  46143009 caattttgccgtgaaaataaggaagctataaaatatagcatc 46142968  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 12294825 - 12294767
Alignment:
Q  89 gattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcat 147  Q
    |||||||||||||||   ||||||||||||||||||||  |||||||||||||||||||    
T  12294825 gattctcacgtccctaggcaattttgccgtgaaaataacaaagctacaaaatgtagcat 12294767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 3271546 - 3271625
Alignment:
Q  69 tggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatc 148  Q
    ||||||||||||||||||   |||||| |||| |    ||||||| |||||||||| ||||||||||||||| |||||||    
T  3271546 tggatctgcgtttaaagcgaaattctcgcgtctcaaggcaattttaccgtgaaaatcaagaagctacaaaatatagcatc 3271625  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 11789333 - 11789258
Alignment:
Q  58 aatagagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagct 133  Q
    |||| ||||||| ||| ||| ||||||| ||||||| | ||||| |  |||||||||||||| |||||||||||||    
T  11789333 aataaagtgtttagatttgcatttaaagtttgattcccgcgtccttagacaattttgccgtggaaataaagaagct 11789258  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 42883959 - 42883918
Alignment:
Q  108 aattttgccgtgaaaataaagaagctacaaaatgtagcatcg 149  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  42883959 aattttgccgtgaaaataaggaagctacaaaatgtagcatcg 42883918  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 35634580 - 35634641
Alignment:
Q  78 gtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaa 139  Q
    |||||||| ||||||||| | ||||| | ||||||||  |||||||||||||||||| ||||    
T  35634580 gtttaaagtttgattctcgcatccctaatcaattttgatgtgaaaataaagaagctataaaa 35634641  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 6455777 - 6455708
Alignment:
Q  90 attctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaacgt 159  Q
    |||||| | ||||| | ||||||| ||||||||||||  ||||||||||||||||||||  |||||||||    
T  6455777 attctcgcatccctaagcaatttttccgtgaaaataacaaagctacaaaatgtagcatcagtgcaaacgt 6455708  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 2907970 - 2907890
Alignment:
Q  65 tgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagc 145  Q
    ||||||| ||| |||||||||  || ||||| ||| |||  |||||||||  |||||||||||||||||| |||| |||||    
T  2907970 tgtttgggtctacgtttaaaggctggttctcgcgttcctagacaattttgatgtgaaaataaagaagctataaaaggtagc 2907890  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 45985140 - 45985088
Alignment:
Q  107 caattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaacgt 159  Q
    ||||||||||||||||||||  ||||| |||||||||| ||| || |||||||    
T  45985140 caattttgccgtgaaaataacaaagctgcaaaatgtagaatcaatccaaacgt 45985088  T

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