View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11123_low_23 (Length: 295)

Name: NF11123_low_23
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11123_low_23
NF11123_low_23
[»] chr7 (12 HSPs)
chr7 (1-290)||(4631371-4631660)
chr7 (1-290)||(4667385-4667662)
chr7 (148-210)||(4637378-4637440)
chr7 (148-210)||(4711584-4711646)
chr7 (148-210)||(4864446-4864508)
chr7 (146-223)||(4654004-4654081)
chr7 (148-212)||(4696702-4696766)
chr7 (149-212)||(4644214-4644277)
chr7 (154-223)||(4783353-4783422)
chr7 (154-223)||(4815782-4815851)
chr7 (245-290)||(4711678-4711723)
chr7 (146-210)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (1-290)||(18925116-18925393)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 4631660 - 4631371
Alignment:
Q  1 ttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttaccctt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631660 ttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttaccctt 4631561  T
Q  101 ctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631560 ctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataa 4631461  T
Q  201 ctttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttctctct 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4631460 ctttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttttctct 4631371  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 4667662 - 4667385
Alignment:
Q  1 ttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttaccctt 100  Q
    ||||||||||||| ||||||||||||||||||||      ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4667662 ttttcttcgcctccatttttacccaacatcgtat------caaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttaccctt 4667569  T
Q  101 ctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataa 200  Q
    |||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |   ||||| ||| || |||    
T  4667568 ctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaa 4667469  T
Q  201 ctttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttctctct 290  Q
    |||||||||||||      |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  4667468 ctttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgccgtcttttctct 4667385  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  148 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 210  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  148 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 210  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  148 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 210  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  146 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 223  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  148 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 212  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  149 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 212  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  154 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 223  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  154 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 223  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 4711678 - 4711723
Alignment:
Q  245 gctttcatcaacggaattgagattgtgtctatgccttcttctctct 290  Q
    |||||||| |||||||| || ||||||||||||||||||| |||||    
T  4711678 gctttcattaacggaatcgaaattgtgtctatgccttcttttctct 4711723  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  146 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 210  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18925116 - 18925393
Alignment:
Q  1 ttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttaccctt 100  Q
    ||||||||||||  ||||||||||||||||||||      ||| || ||||||||| | ||||||||||||| |||||||| ||||||||  | ||||||    
T  18925116 ttttcttcgccttcatttttacccaacatcgtat------caaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcaccctt 18925209  T
Q  101 ctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataa 200  Q
    ||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||    
T  18925210 ctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataa 18925309  T
Q  201 ctttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttctctct 290  Q
    ||||||||||   ||| ||   || ||| |||  ||| | ||  ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  18925310 ctttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct 18925393  T

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