View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_25 (Length: 294)
Name: NF11123_low_25
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 35766758 - 35766482
Alignment:
| Q |
1 |
tttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766758 |
tttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagctt |
35766659 |
T |
|
| Q |
101 |
cattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagacataaataatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766658 |
cattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagacataaataatcc |
35766559 |
T |
|
| Q |
201 |
caaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766558 |
caaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaa |
35766482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 19358848 - 19358741
Alignment:
| Q |
26 |
caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaaaataactgcactacctt |
125 |
Q |
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| T |
19358848 |
caggaaaaatttgaataggtttccaaacattatcacgcaaatttaaaactcgcgcacgagttctgttttcagcttcatccaaaagtaacatcacaacctt |
19358749 |
T |
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| Q |
126 |
ataagtct |
133 |
Q |
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|||||||| |
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| T |
19358748 |
ataagtct |
19358741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 46769088 - 46769018
Alignment:
| Q |
26 |
caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
96 |
Q |
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|||||||||||||||| |||||||| ||||| ||||| ||| ||||||||||||| |||||||| |||| |
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| T |
46769088 |
caggaaaactttgaatagttctccaaatattatcacccacactcaaaacttgcacatgagttctattttca |
46769018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 18953261 - 18953299
Alignment:
| Q |
20 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
58 |
Q |
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| T |
18953261 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18953299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 18983308 - 18983346
Alignment:
| Q |
20 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
58 |
Q |
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| T |
18983308 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18983346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 18997954 - 18997992
Alignment:
| Q |
20 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
58 |
Q |
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| T |
18997954 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18997992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 36255101 - 36254976
Alignment:
| Q |
9 |
aaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaa |
108 |
Q |
| |
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|||||||| |||| | |||||||| ||||||| || ||||||||||||||| || || |||| |||||| |||||||||| || | | |||| ||| |
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| T |
36255101 |
aaaaggaagaagaacagcaggaaaattttgaataggtttccaaacattattacacacacataaagtttgcacgtcagttctatttttaacatcatccaaa |
36255002 |
T |
|
| Q |
109 |
aataactgcactaccttataagtctc |
134 |
Q |
| |
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| |||| ||| |||||||||||||| |
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| T |
36255001 |
attaacatcacaaccttataagtctc |
36254976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 30398820 - 30398771
Alignment:
| Q |
47 |
tccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
96 |
Q |
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|||||||||||||| ||| |||||||||| |||||| |||||||| |||| |
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| T |
30398820 |
tccaaacattattagccacacttaaaactcgcacatgagttctattttca |
30398771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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