View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_26 (Length: 294)
Name: NF11123_low_26
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 4631924 - 4631661
Alignment:
| Q |
20 |
ccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggat |
119 |
Q |
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| T |
4631924 |
ccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggat |
4631825 |
T |
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| Q |
120 |
aacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcg |
219 |
Q |
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| T |
4631824 |
aacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcg |
4631725 |
T |
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| Q |
220 |
cctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
283 |
Q |
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| T |
4631724 |
cctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
4631661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 4667911 - 4667683
Alignment:
| Q |
29 |
ggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaa |
128 |
Q |
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| T |
4667911 |
ggttaacagctcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaa |
4667812 |
T |
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| Q |
129 |
ttattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcac |
228 |
Q |
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| T |
4667811 |
ctcttctctgtcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcac |
4667718 |
T |
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| Q |
229 |
gtatttctttttcgaatttcacattctccttttct |
263 |
Q |
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| T |
4667717 |
gtatatcattttccgatttcacattctcattttct |
4667683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 18924874 - 18925115
Alignment:
| Q |
42 |
tatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatca |
141 |
Q |
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| T |
18924874 |
tatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacatggatgacaccaaactattctctatca |
18924973 |
T |
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| Q |
142 |
ttgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttc |
241 |
Q |
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| T |
18924974 |
ttgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttc |
18925073 |
T |
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| Q |
242 |
gaatttcacattctccttttcttccatcaccaatggccctat |
283 |
Q |
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| T |
18925074 |
caacttcacattctcatttccttccgtcgctaatagccctat |
18925115 |
T |
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