View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_29 (Length: 270)
Name: NF11123_low_29
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_29 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 16005588 - 16005333
Alignment:
| Q |
1 |
gtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaagttcaaggggaataacaaaatcataaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16005588 |
gtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaaattcaaggggaataacaaaatcataaa |
16005489 |
T |
|
| Q |
101 |
tcgtaaaatcgcaatcaaaatgatgaattttgagatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctcttccaaaagcttttgca |
200 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16005488 |
tcgtaaaatcgcaatcaaaatcatgaattttgggatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctcttccaaaagcttttgca |
16005389 |
T |
|
| Q |
201 |
taaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtggtatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16005388 |
taaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtggtatt |
16005333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 6136389 - 6136421
Alignment:
| Q |
89 |
caaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
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|||||||| |||||||||||||||||||||||| |
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|
| T |
6136389 |
caaaatcaaaaatcgtaaaatcgcaatcaaaat |
6136421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 19245915 - 19245866
Alignment:
| Q |
72 |
aagttcaaggggaataacaaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
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|
| T |
19245915 |
aagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaat |
19245866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 120
Target Start/End: Original strand, 8629627 - 8629657
Alignment:
| Q |
90 |
aaaatcataaatcgtaaaatcgcaatcaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8629627 |
aaaatcataaatcgtaaaatcgcaatcaaaa |
8629657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 4575047 - 4575007
Alignment:
| Q |
81 |
gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
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||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4575047 |
gggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaat |
4575007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 8758 - 8718
Alignment:
| Q |
81 |
gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
8758 |
gggaataacaaaatcggaactcgtaaaatcgcaatcaaaat |
8718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 26879819 - 26879787
Alignment:
| Q |
89 |
caaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
26879819 |
caaaatcaaaaatcgtaaaatcgcaatcaaaat |
26879787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 31108386 - 31108354
Alignment:
| Q |
89 |
caaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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| T |
31108386 |
caaaatcgtaaatcgtaaaatcgcaatcaaaat |
31108354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 10394919 - 10394887
Alignment:
| Q |
89 |
caaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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| T |
10394919 |
caaaatcaaaaatcgtaaaatcgcaatcaaaat |
10394887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 25146580 - 25146620
Alignment:
| Q |
81 |
gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat |
121 |
Q |
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||||||| ||||||| |||||||||||||||||||||||| |
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| T |
25146580 |
gggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaat |
25146620 |
T |
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