View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_32 (Length: 263)
Name: NF11123_low_32
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_32 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 2391587 - 2391847
Alignment:
| Q |
3 |
aagataggctttcaagctgagatgaagctgaaagaaggagatgggattagttttgagggtttccctgaatggaggactaagcctgacactgtgaggttgc |
102 |
Q |
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| T |
2391587 |
aagataggattccaagctgagaagaagctgaaagaaggagatgggattagttttgagggtttccctgaatggaggactaagcctgacactgtgaggttgc |
2391686 |
T |
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| Q |
103 |
attttgaggtgctggctaaagttgatggtgataaagtcatacctgagagagtcatgcaagtgaaccctgttgtcacggaggacagtgtggcgccaaatat |
202 |
Q |
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| T |
2391687 |
attttgaggtgctggctaaagttgatggtgataaagtcatacctgagagagtcatgcaagtgaaccctgttgtcacagaggacagtgtggcgccaaatat |
2391786 |
T |
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| Q |
203 |
gctgactaacaatgggaccatgtcaaagatgccactcgttcagcctccacccatccccttc |
263 |
Q |
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| T |
2391787 |
gctgactaacaatgggaccatgtcaaagatgccactcgttcagcctccgcccatccccttc |
2391847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 56189674 - 56189413
Alignment:
| Q |
1 |
taaagataggctttcaagctgagatgaagctgaaagaaggagatgggattagttttgagggtttccctgaatggaggactaagcctgacactgtgaggtt |
100 |
Q |
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| T |
56189674 |
taaagataggctttcaagctgagaagaagttgaaggaaggagatggtgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagatt |
56189575 |
T |
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| Q |
101 |
gcattttgaggtgctggctaaagttgatggtgataaagtcatacctgagagagtcatgcaagtgaaccctgttgtcacggaggacagtgtggcgccaaat |
200 |
Q |
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||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||| || | |
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| T |
56189574 |
gcaatttgaggtgctggcaaaagtggatggtgataaagtcatacctgagagagtcgtgcaagtgaaccctgtttttgtggaggacactgtggcgttaagt |
56189475 |
T |
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| Q |
201 |
atgctgactaacaatgggaccatgtcaaagatgccactcgttcagcctccacccatccccttc |
263 |
Q |
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|||| ||||||||||||||||||||||| ||| | | ||||||||||| |||||||||||| |
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| T |
56189474 |
gtgctaactaacaatgggaccatgtcaaa-atgtctattgttcagcctccgcccatccccttc |
56189413 |
T |
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