View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_33 (Length: 261)
Name: NF11123_low_33
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 27607633 - 27607410
Alignment:
| Q |
20 |
ctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27607633 |
ctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattgcttaccttcaagctg |
27607534 |
T |
|
| Q |
120 |
gtgccggtattgttgccgacagtgaccctgctgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
219 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607533 |
gtgcaggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
27607434 |
T |
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| Q |
220 |
tttcgttcataaataagatctctg |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
27607433 |
tttcgttcataaataagatctctg |
27607410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 31506673 - 31506896
Alignment:
| Q |
20 |
ctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506673 |
ctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctg |
31506772 |
T |
|
| Q |
120 |
gtgccggtattgttgccgacagtgaccctgctgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506773 |
gtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
31506872 |
T |
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| Q |
220 |
tttcgttcataaataagatctctg |
243 |
Q |
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|||| ||||||||||||||||||| |
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| T |
31506873 |
tttcattcataaataagatctctg |
31506896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 34496086 - 34495863
Alignment:
| Q |
20 |
ctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgccaagagtggattgcttaccttcaagctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34496086 |
ctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattgcttaccttcaagctg |
34495987 |
T |
|
| Q |
120 |
gtgccggtattgttgccgacagtgaccctgctgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
219 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495986 |
gtgctggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcgacttggctgagtctgc |
34495887 |
T |
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| Q |
220 |
tttcgttcataaataagatctctg |
243 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
34495886 |
tttcgttcataaataagatctctg |
34495863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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