View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11123_low_37 (Length: 249)
Name: NF11123_low_37
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 17269512 - 17269686
Alignment:
| Q |
20 |
ggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaacaccatttgttattcaaattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17269512 |
ggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaacaccatttgttattcaaattt |
17269611 |
T |
|
| Q |
120 |
gatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatacatttgtctttgattaattttttaaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17269612 |
gatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatatatttgtctttgattaattttttaaa |
17269686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 17269712 - 17269760
Alignment:
| Q |
191 |
taaaagtttggtagatatttgcacagttctaaatttaatgtggcctatg |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
17269712 |
taaaagtttggtagatatttgcatagttctaaattttatgtggcctatg |
17269760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University