View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_38 (Length: 242)
Name: NF11123_low_38
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10069393 - 10069616
Alignment:
| Q |
1 |
cgcagatactcacatgcctctttatcacgttgtctctgatcttaatcattcacctgtgttacaatatatacttaaaagtcaaaggtgtttgaacgatcga |
100 |
Q |
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|||||| |||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10069393 |
cgcagaaactcacatgcctctttgttatgttgtttctgatcttaatcattcacctgtgttacaatatatactcaaaagtcaaaggtgtttgaacgatcga |
10069492 |
T |
|
| Q |
101 |
ggcctacactaaccatctaactatcggagcggatctagacttgtgttaactctaattcaannnnnnnattcctttttatnnnnnnnttcgatcaaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
10069493 |
ggcctacactaaccatctaactatcggagcggatctagacttgtgttaactctaattcaatttttttattcctttttataaaaaaattcgatcaaaagtt |
10069592 |
T |
|
| Q |
201 |
ttcagtcatccacagctgcccggt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
10069593 |
ttcagtcatccacagctgcccggt |
10069616 |
T |
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