View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_4 (Length: 439)
Name: NF11123_low_4
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 131 - 423
Target Start/End: Original strand, 44688538 - 44688830
Alignment:
| Q |
131 |
tgggagctgatgccccgcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatg |
230 |
Q |
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| T |
44688538 |
tgggagctgatgccccgcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatg |
44688637 |
T |
|
| Q |
231 |
gagcagcggactttagtgtgcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtgaacat |
330 |
Q |
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| T |
44688638 |
gagcagcggactttagtgtgcaacaagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacat |
44688737 |
T |
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| Q |
331 |
ctatgactctcatggttttgggttcccgggtgaagatggtctaaggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagtt |
423 |
Q |
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| T |
44688738 |
ctatgactctcatggttttgggttcccgggtgaagatggtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagtt |
44688830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 44688446 - 44688537
Alignment:
| Q |
6 |
agaagcagagaaaaaaggggcgaagaaaggttgctgctgtcacatgccatggaaataaacctgttgctctgtgccaattacatagtaacgga |
97 |
Q |
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| T |
44688446 |
agaagctgagaaaaaaggggcgaagaaaggttgctgctgtcacatgccatggaaataaacctgttgctctgtgcgaattacatagtaacgga |
44688537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 423
Target Start/End: Original strand, 13170573 - 13170729
Alignment:
| Q |
267 |
atgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtgaacatctatgactctcatggttttgggttcccgggtgaaga |
366 |
Q |
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| T |
13170573 |
atgtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaata |
13170672 |
T |
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| Q |
367 |
tggtctaaggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagtt |
423 |
Q |
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|||| ||| |||||||||||||| || |||| ||| | ||||||||||| ||||| |
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| T |
13170673 |
tggtttaaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagtt |
13170729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 423
Target Start/End: Complemental strand, 41985972 - 41985699
Alignment:
| Q |
150 |
tgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttagtgt |
249 |
Q |
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||||||| ||||| ||||||| || || |||||||| | ||||| | ||| ||||||||||| ||||| |||||| |||| | ||||| |||||| |
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| T |
41985972 |
tgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggacc---ggactatagtgt |
41985876 |
T |
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| Q |
250 |
gcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtga---gttgttgctagtgaacatctatgactctcatggt |
346 |
Q |
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| | | ||||| || |||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||| || |
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| T |
41985875 |
cgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgt |
41985776 |
T |
|
| Q |
347 |
tttgggttcccgggtgaagatggtctaaggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagtt |
423 |
Q |
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||||| ||||| |||||||||||| ||| |||||||||||||| || |||||||| | ||||||||||| ||||| |
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| T |
41985775 |
tttggtttccccggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagtt |
41985699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 41981061 - 41980961
Alignment:
| Q |
287 |
aaattcctggtagagagtgaaggtgagttgttgctagtgaacatctatgactctcatggttttgggttcccgggtgaagatggtctaaggcttgatgtgt |
386 |
Q |
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|||||||||||||||||||| ||||| || ||||||||| |||| ||| |||||||| || |||||||||| |||||||||||| | | |||||||||| |
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| T |
41981061 |
aaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttcaatcttgatgtgt |
41980962 |
T |
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| Q |
387 |
t |
387 |
Q |
| |
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| |
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| T |
41980961 |
t |
41980961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 423
Target Start/End: Complemental strand, 9448538 - 9448385
Alignment:
| Q |
270 |
ttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtgaacatctatgactctcatggttttgggttcccgggtgaagatgg |
369 |
Q |
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||||||||||||||||||||||| | || || || || || || |||||||||||| |||| ||||| | | | |||| | |||||||||| |||| |
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| T |
9448538 |
ttgatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgc |
9448439 |
T |
|
| Q |
370 |
tctaaggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagtt |
423 |
Q |
| |
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| ||||| |||||||||| | ||| |||||||| | ||||||||||| ||||| |
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| T |
9448438 |
tataagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagtt |
9448385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 374
Target Start/End: Complemental strand, 18991545 - 18991321
Alignment:
| Q |
147 |
gcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttag |
246 |
Q |
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|||||||||| ||||| ||||||| || || |||||||||| ||||||| || |||||||||||| ||||| |||| | |||| ||||| ||| |
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| T |
18991545 |
gcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgtttggatt---ggactatag |
18991449 |
T |
|
| Q |
247 |
tgtgcaataagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtgaacatctatgactctcatggt |
346 |
Q |
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||| | | ||||||| || |||| |||||||||| || |||||| |||||||| ||||||||||||||||||||||| |||||| |||||| ||| || |
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| T |
18991448 |
tgttgagttagtggctgaatatgtgaatggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgt |
18991349 |
T |
|
| Q |
347 |
tttgggttcccgggtgaagatggtctaa |
374 |
Q |
| |
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||||||||||| || ||| | ||||||| |
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| T |
18991348 |
tttgggttccctggcgaaaaaggtctaa |
18991321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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